miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19542 5' -60.8 NC_004685.1 + 47697 0.67 0.482476
Target:  5'- uCgGCCGCGGCuuuggCGGGGAC--UUCGGg -3'
miRNA:   3'- -GgCGGCGCCGua---GCUCCUGcgGAGCU- -5'
19542 5' -60.8 NC_004685.1 + 51432 0.67 0.482476
Target:  5'- cCUGCUGCGGCAUCGGuGcgagcaccguGCGCCcagcCGAc -3'
miRNA:   3'- -GGCGGCGCCGUAGCUcC----------UGCGGa---GCU- -5'
19542 5' -60.8 NC_004685.1 + 45337 0.67 0.482476
Target:  5'- cCCGCCGCGGUuguugaagCGGGagucGACGUCgcCGAa -3'
miRNA:   3'- -GGCGGCGCCGua------GCUC----CUGCGGa-GCU- -5'
19542 5' -60.8 NC_004685.1 + 66926 0.67 0.482476
Target:  5'- gCGCCGCGGCAccgugccCGAcGaGACGCUggccauguUCGAc -3'
miRNA:   3'- gGCGGCGCCGUa------GCU-C-CUGCGG--------AGCU- -5'
19542 5' -60.8 NC_004685.1 + 65511 0.67 0.482476
Target:  5'- aCCGUCG-GGCAggcUCGgccGGGugGUUUCGAc -3'
miRNA:   3'- -GGCGGCgCCGU---AGC---UCCugCGGAGCU- -5'
19542 5' -60.8 NC_004685.1 + 11309 0.67 0.472983
Target:  5'- cCCGCCuGCGGgaGUCGuGGAUggGCCgugcgCGAc -3'
miRNA:   3'- -GGCGG-CGCCg-UAGCuCCUG--CGGa----GCU- -5'
19542 5' -60.8 NC_004685.1 + 134 0.67 0.472983
Target:  5'- gCGCgggCGCGGCugcCGGGGugGCCggGGa -3'
miRNA:   3'- gGCG---GCGCCGua-GCUCCugCGGagCU- -5'
19542 5' -60.8 NC_004685.1 + 46459 0.67 0.463585
Target:  5'- uUCGCCGCGGCcuuggcGUCGAGGGUGa--CGAu -3'
miRNA:   3'- -GGCGGCGCCG------UAGCUCCUGCggaGCU- -5'
19542 5' -60.8 NC_004685.1 + 37638 0.67 0.463585
Target:  5'- gUGUCGUGGUGUUGGGGucuacgcucguCGCCUUGGg -3'
miRNA:   3'- gGCGGCGCCGUAGCUCCu----------GCGGAGCU- -5'
19542 5' -60.8 NC_004685.1 + 20033 0.67 0.454287
Target:  5'- cCCGCCGgGGCGgaucaucgCGGGGuucguCGCCaaGGa -3'
miRNA:   3'- -GGCGGCgCCGUa-------GCUCCu----GCGGagCU- -5'
19542 5' -60.8 NC_004685.1 + 58092 0.67 0.445089
Target:  5'- gCCGCCcuCGGCGaugUGAGGGCG-UUCGAu -3'
miRNA:   3'- -GGCGGc-GCCGUa--GCUCCUGCgGAGCU- -5'
19542 5' -60.8 NC_004685.1 + 21612 0.68 0.435998
Target:  5'- aCCGCCGCG--AUCGAG--UGCUUCGAg -3'
miRNA:   3'- -GGCGGCGCcgUAGCUCcuGCGGAGCU- -5'
19542 5' -60.8 NC_004685.1 + 1910 0.68 0.418141
Target:  5'- cCCGCUGCGGCcgCGGuuGGCGUCagCGGc -3'
miRNA:   3'- -GGCGGCGCCGuaGCUc-CUGCGGa-GCU- -5'
19542 5' -60.8 NC_004685.1 + 15057 0.68 0.418141
Target:  5'- uUCGCacCGCGGUGaCGAGGugGCCggGGa -3'
miRNA:   3'- -GGCG--GCGCCGUaGCUCCugCGGagCU- -5'
19542 5' -60.8 NC_004685.1 + 10236 0.68 0.416379
Target:  5'- gCCGCCGgGGUGUCGGauuGGAUGCgggagaaguccaUCGAg -3'
miRNA:   3'- -GGCGGCgCCGUAGCU---CCUGCGg-----------AGCU- -5'
19542 5' -60.8 NC_004685.1 + 54484 0.68 0.412871
Target:  5'- gCCGCC-CGGCGaacgccacgccgacuUCGAuGucuGCGCCUCGAu -3'
miRNA:   3'- -GGCGGcGCCGU---------------AGCUcC---UGCGGAGCU- -5'
19542 5' -60.8 NC_004685.1 + 24487 0.68 0.40938
Target:  5'- uCgGCCGCGGCGUacAGGuCGCCggCGu -3'
miRNA:   3'- -GgCGGCGCCGUAgcUCCuGCGGa-GCu -5'
19542 5' -60.8 NC_004685.1 + 39252 0.68 0.40938
Target:  5'- aCGgCGCgaacGGCGUCGGGcaACGCCUCGc -3'
miRNA:   3'- gGCgGCG----CCGUAGCUCc-UGCGGAGCu -5'
19542 5' -60.8 NC_004685.1 + 31064 0.68 0.392208
Target:  5'- gCCGCC-CGGCugGUUGAGGuuGCCgaugCGGu -3'
miRNA:   3'- -GGCGGcGCCG--UAGCUCCugCGGa---GCU- -5'
19542 5' -60.8 NC_004685.1 + 31486 0.69 0.383799
Target:  5'- cCCGCCGUGGgugcaugcgAUCGAGGACauCUUCGGc -3'
miRNA:   3'- -GGCGGCGCCg--------UAGCUCCUGc-GGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.