miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19543 3' -61.6 NC_004685.1 + 53960 0.66 0.478169
Target:  5'- gUCCUGCGCCgagCCCcaacucggGGUGgccCAGGaCUCGg -3'
miRNA:   3'- -AGGACGCGGa--GGG--------CCAC---GUCUaGGGC- -5'
19543 3' -61.6 NC_004685.1 + 64608 0.66 0.4592
Target:  5'- aCCguggaauuCGCCUCCCGGaGCAGAuUUUCGa -3'
miRNA:   3'- aGGac------GCGGAGGGCCaCGUCU-AGGGC- -5'
19543 3' -61.6 NC_004685.1 + 62657 0.66 0.453588
Target:  5'- gCCUGCGCCUCCgcucaUGGUugccgcgaccgucgcGCGGGUagCCGc -3'
miRNA:   3'- aGGACGCGGAGG-----GCCA---------------CGUCUAg-GGC- -5'
19543 3' -61.6 NC_004685.1 + 58176 0.66 0.449867
Target:  5'- gUCUGCGCCgaaugCCCuGUGCuca-CCCGg -3'
miRNA:   3'- aGGACGCGGa----GGGcCACGucuaGGGC- -5'
19543 3' -61.6 NC_004685.1 + 8562 0.66 0.440639
Target:  5'- gUCUGCGCCUguuUCgGGUGCcg--CCCGg -3'
miRNA:   3'- aGGACGCGGA---GGgCCACGucuaGGGC- -5'
19543 3' -61.6 NC_004685.1 + 56159 0.66 0.43152
Target:  5'- aCCgcggucgGUGCCUCgUCGGgGCGG-UCCCGg -3'
miRNA:   3'- aGGa------CGCGGAG-GGCCaCGUCuAGGGC- -5'
19543 3' -61.6 NC_004685.1 + 36544 0.67 0.421617
Target:  5'- gCCUGgGCCUgcacaccggcgcgCCCGGcgacGCGGGUCCg- -3'
miRNA:   3'- aGGACgCGGA-------------GGGCCa---CGUCUAGGgc -5'
19543 3' -61.6 NC_004685.1 + 62344 0.67 0.408337
Target:  5'- gCCUuCGCCUUCCacgccggggccaaacGGuUGCAGGUCCUGc -3'
miRNA:   3'- aGGAcGCGGAGGG---------------CC-ACGUCUAGGGC- -5'
19543 3' -61.6 NC_004685.1 + 11778 0.68 0.331351
Target:  5'- ---cGgGCCgcccacUCCGGUGguGAUCCCGa -3'
miRNA:   3'- aggaCgCGGa-----GGGCCACguCUAGGGC- -5'
19543 3' -61.6 NC_004685.1 + 30298 0.69 0.281308
Target:  5'- aCCUG-GCCU-CCGGcGCGGuUCCCGg -3'
miRNA:   3'- aGGACgCGGAgGGCCaCGUCuAGGGC- -5'
19543 3' -61.6 NC_004685.1 + 46475 0.73 0.175677
Target:  5'- aUCC-GUGgCUCCUGGUGUuGAUCCCa -3'
miRNA:   3'- -AGGaCGCgGAGGGCCACGuCUAGGGc -5'
19543 3' -61.6 NC_004685.1 + 29018 0.75 0.12201
Target:  5'- gCCUGCGCUUCaucuCCGGUGaCAGcagcGUCCCGu -3'
miRNA:   3'- aGGACGCGGAG----GGCCAC-GUC----UAGGGC- -5'
19543 3' -61.6 NC_004685.1 + 63815 1.09 0.000346
Target:  5'- cUCCUGCGCCUCCCGGUGCAGAUCCCGg -3'
miRNA:   3'- -AGGACGCGGAGGGCCACGUCUAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.