miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19543 5' -53.7 NC_004685.1 + 66894 0.66 0.86992
Target:  5'- uGCGAcGaguucaccacuacccCGCCCgucGCGcGCCGcgGCACCg -3'
miRNA:   3'- cCGCUuU---------------GCGGG---UGU-CGGUuaCGUGG- -5'
19543 5' -53.7 NC_004685.1 + 13601 0.66 0.86992
Target:  5'- cGUGGauGACGCcgcaguucguguuccCCGCGGCCGA-GCACg -3'
miRNA:   3'- cCGCU--UUGCG---------------GGUGUCGGUUaCGUGg -5'
19543 5' -53.7 NC_004685.1 + 1885 0.66 0.866745
Target:  5'- uGGCGucggucaGgCCGCGGCC-GUGC-CCg -3'
miRNA:   3'- -CCGCuuug---CgGGUGUCGGuUACGuGG- -5'
19543 5' -53.7 NC_004685.1 + 45794 0.66 0.866745
Target:  5'- aGGCGguGCgcaagcugGCCCuggagguggcGCAGCgCAucgGCACCg -3'
miRNA:   3'- -CCGCuuUG--------CGGG----------UGUCG-GUua-CGUGG- -5'
19543 5' -53.7 NC_004685.1 + 52331 0.66 0.866745
Target:  5'- aGCGGGccaguugccGCGCCCGCuugaaguagucGCCAccucGCACCu -3'
miRNA:   3'- cCGCUU---------UGCGGGUGu----------CGGUua--CGUGG- -5'
19543 5' -53.7 NC_004685.1 + 477 0.66 0.866745
Target:  5'- cGGCGAuggcuucggugAGCGCagACAuGCUGA-GCACCg -3'
miRNA:   3'- -CCGCU-----------UUGCGggUGU-CGGUUaCGUGG- -5'
19543 5' -53.7 NC_004685.1 + 26585 0.66 0.866745
Target:  5'- uGCGAAgcugcGCGCCgGCGGCaagucgGCgGCCg -3'
miRNA:   3'- cCGCUU-----UGCGGgUGUCGguua--CG-UGG- -5'
19543 5' -53.7 NC_004685.1 + 31075 0.66 0.866745
Target:  5'- cGGCGAcaugggugcGGCGCUCGacGCCGAcuucgGCAUCa -3'
miRNA:   3'- -CCGCU---------UUGCGGGUguCGGUUa----CGUGG- -5'
19543 5' -53.7 NC_004685.1 + 67495 0.66 0.866745
Target:  5'- gGGuCGAAuuCGUCCGC-GCCAucgacacacUGCGCCc -3'
miRNA:   3'- -CC-GCUUu-GCGGGUGuCGGUu--------ACGUGG- -5'
19543 5' -53.7 NC_004685.1 + 41624 0.66 0.866745
Target:  5'- cGGCGAccucaGCCU-CAGCCuuggcccGCGCCu -3'
miRNA:   3'- -CCGCUuug--CGGGuGUCGGuua----CGUGG- -5'
19543 5' -53.7 NC_004685.1 + 11756 0.66 0.865945
Target:  5'- -aUGGAGCGCCgcgaggagcugcaCGCAGCCAu--CGCCg -3'
miRNA:   3'- ccGCUUUGCGG-------------GUGUCGGUuacGUGG- -5'
19543 5' -53.7 NC_004685.1 + 66989 0.66 0.865945
Target:  5'- cGUGGAucAUGCCugaccucgaaucaCACAGCgGGUGCugCg -3'
miRNA:   3'- cCGCUU--UGCGG-------------GUGUCGgUUACGugG- -5'
19543 5' -53.7 NC_004685.1 + 14023 0.66 0.865144
Target:  5'- aGGCGGucgaguuCGCCaacgGCAGCCGcauccuguucgGCGCCc -3'
miRNA:   3'- -CCGCUuu-----GCGGg---UGUCGGUua---------CGUGG- -5'
19543 5' -53.7 NC_004685.1 + 39370 0.66 0.864339
Target:  5'- cGGCgGAAACGgCacaacaccgggcggCGCGGCCAAUgguggGCACUg -3'
miRNA:   3'- -CCG-CUUUGCgG--------------GUGUCGGUUA-----CGUGG- -5'
19543 5' -53.7 NC_004685.1 + 39199 0.66 0.861911
Target:  5'- -cCGGAACGCuCCACgcgccgccuggcggcGGCUucgGCGCCg -3'
miRNA:   3'- ccGCUUUGCG-GGUG---------------UCGGuuaCGUGG- -5'
19543 5' -53.7 NC_004685.1 + 10770 0.66 0.85864
Target:  5'- aGUGAAGaagugaGCCCAgAGCUAcGUGCugUa -3'
miRNA:   3'- cCGCUUUg-----CGGGUgUCGGU-UACGugG- -5'
19543 5' -53.7 NC_004685.1 + 66700 0.66 0.85864
Target:  5'- uGGCGcacgccGACGCaCCGC-GCCAucUGgACCg -3'
miRNA:   3'- -CCGCu-----UUGCG-GGUGuCGGUu-ACgUGG- -5'
19543 5' -53.7 NC_004685.1 + 28071 0.66 0.85864
Target:  5'- aGGCuGAGGuCGCCgAC-GCCGA-GCugCa -3'
miRNA:   3'- -CCG-CUUU-GCGGgUGuCGGUUaCGugG- -5'
19543 5' -53.7 NC_004685.1 + 12501 0.66 0.85864
Target:  5'- gGGUGguGCGCgaGgAGCCGcuGUGCACg -3'
miRNA:   3'- -CCGCuuUGCGggUgUCGGU--UACGUGg -5'
19543 5' -53.7 NC_004685.1 + 16117 0.66 0.85864
Target:  5'- cGCc-GACGCgCACGGCCAcgGUcCCc -3'
miRNA:   3'- cCGcuUUGCGgGUGUCGGUuaCGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.