miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19544 3' -60.1 NC_004685.1 + 6406 0.66 0.540355
Target:  5'- aCACUcgGCGGAuucuuCUCCGgCGGCGCc -3'
miRNA:   3'- aGUGGa-CGCCUuac--GGGGCgGUCGCG- -5'
19544 3' -60.1 NC_004685.1 + 48446 0.66 0.540355
Target:  5'- aCGCCUGCcagcacGAUGgCCgCGCCgaucAGCGCg -3'
miRNA:   3'- aGUGGACGcc----UUACgGG-GCGG----UCGCG- -5'
19544 3' -60.1 NC_004685.1 + 55706 0.66 0.540355
Target:  5'- -gACCuUGCGGAugaacgGCgcgaCCCGCUcGCGCu -3'
miRNA:   3'- agUGG-ACGCCUua----CG----GGGCGGuCGCG- -5'
19544 3' -60.1 NC_004685.1 + 50499 0.66 0.539333
Target:  5'- gCGCgUGCGauGUGCCCCGacauguaCCGGuCGCc -3'
miRNA:   3'- aGUGgACGCcuUACGGGGC-------GGUC-GCG- -5'
19544 3' -60.1 NC_004685.1 + 37518 0.66 0.530163
Target:  5'- cCACCU-CGGAgccgauggugGUGCCCUGCgucggcacgccCAGCGg -3'
miRNA:   3'- aGUGGAcGCCU----------UACGGGGCG-----------GUCGCg -5'
19544 3' -60.1 NC_004685.1 + 23082 0.66 0.530163
Target:  5'- aUCACCUGaaacaGGGugaccGCCUCGCUguccagguGGUGCg -3'
miRNA:   3'- -AGUGGACg----CCUua---CGGGGCGG--------UCGCG- -5'
19544 3' -60.1 NC_004685.1 + 17430 0.66 0.530163
Target:  5'- -aGgCUGCGcGAugaaggcgGCCCUGCCGGUGg -3'
miRNA:   3'- agUgGACGC-CUua------CGGGGCGGUCGCg -5'
19544 3' -60.1 NC_004685.1 + 36606 0.66 0.530163
Target:  5'- -gACCUgGCGG-GUGCgCUCGCCGcGgGCa -3'
miRNA:   3'- agUGGA-CGCCuUACG-GGGCGGU-CgCG- -5'
19544 3' -60.1 NC_004685.1 + 61738 0.66 0.520041
Target:  5'- -gGCCaGcCGGAugaucGCCgUCGCCAGCGUg -3'
miRNA:   3'- agUGGaC-GCCUua---CGG-GGCGGUCGCG- -5'
19544 3' -60.1 NC_004685.1 + 18965 0.66 0.520041
Target:  5'- gCGCCguUGCGGuccUG-UUCGCCAGCGUg -3'
miRNA:   3'- aGUGG--ACGCCuu-ACgGGGCGGUCGCG- -5'
19544 3' -60.1 NC_004685.1 + 19353 0.66 0.509997
Target:  5'- gCGCC-GCGGcgaagucgGCCCCGgCAGCccGCu -3'
miRNA:   3'- aGUGGaCGCCuua-----CGGGGCgGUCG--CG- -5'
19544 3' -60.1 NC_004685.1 + 44296 0.66 0.509997
Target:  5'- cCAgCUGCGcaucGAAUgGCCCCaGCUgggcgGGCGCa -3'
miRNA:   3'- aGUgGACGC----CUUA-CGGGG-CGG-----UCGCG- -5'
19544 3' -60.1 NC_004685.1 + 34806 0.66 0.509997
Target:  5'- gCAgCUGCGcGGUGCCCaC-CCAcGCGCc -3'
miRNA:   3'- aGUgGACGCcUUACGGG-GcGGU-CGCG- -5'
19544 3' -60.1 NC_004685.1 + 11966 0.66 0.500035
Target:  5'- aCGCagcGCGGGucggguuacgGUGCaCUGCCAGUGCg -3'
miRNA:   3'- aGUGga-CGCCU----------UACGgGGCGGUCGCG- -5'
19544 3' -60.1 NC_004685.1 + 30721 0.66 0.500035
Target:  5'- gCGCagaGUGGGAUGUUCCGCaUGGCGUg -3'
miRNA:   3'- aGUGga-CGCCUUACGGGGCG-GUCGCG- -5'
19544 3' -60.1 NC_004685.1 + 26844 0.66 0.500035
Target:  5'- cCGCC-GCcgu-UGCCgCCGCuCAGCGCa -3'
miRNA:   3'- aGUGGaCGccuuACGG-GGCG-GUCGCG- -5'
19544 3' -60.1 NC_004685.1 + 35752 0.66 0.490159
Target:  5'- gCACCgugGCGGGuggcaGCUCCacgaaagcGCCGGUGCc -3'
miRNA:   3'- aGUGGa--CGCCUua---CGGGG--------CGGUCGCG- -5'
19544 3' -60.1 NC_004685.1 + 25526 0.66 0.487214
Target:  5'- uUCACCUGCGGucUGUUgcgcagcacggugaUCGCggacugCAGCGCg -3'
miRNA:   3'- -AGUGGACGCCuuACGG--------------GGCG------GUCGCG- -5'
19544 3' -60.1 NC_004685.1 + 59875 0.67 0.480376
Target:  5'- -aACCcGCGcagcGUGCCCucagCGCCAGCGUc -3'
miRNA:   3'- agUGGaCGCcu--UACGGG----GCGGUCGCG- -5'
19544 3' -60.1 NC_004685.1 + 31938 0.67 0.480376
Target:  5'- cCACCacgGCagccGGGAUGCCCaGC-AGCGCc -3'
miRNA:   3'- aGUGGa--CG----CCUUACGGGgCGgUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.