miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19544 5' -52.5 NC_004685.1 + 25894 0.66 0.912421
Target:  5'- cCGACGCUGAucgacuccggcuucuCGUUggaguUGCCGGUguGGUGc -3'
miRNA:   3'- -GUUGCGACU---------------GCAAac---ACGGCCA--UCGC- -5'
19544 5' -52.5 NC_004685.1 + 17322 0.66 0.909839
Target:  5'- ---aGCUGGCcaagGUGCgaGGUGGCGa -3'
miRNA:   3'- guugCGACUGcaaaCACGg-CCAUCGC- -5'
19544 5' -52.5 NC_004685.1 + 13997 0.66 0.909839
Target:  5'- --gUGCUGcAUGUccGUGCCGGccAGCGu -3'
miRNA:   3'- guuGCGAC-UGCAaaCACGGCCa-UCGC- -5'
19544 5' -52.5 NC_004685.1 + 47293 0.66 0.909839
Target:  5'- gAGCGgUGGCGUgUG-GCCGaGgAGCGa -3'
miRNA:   3'- gUUGCgACUGCAaACaCGGC-CaUCGC- -5'
19544 5' -52.5 NC_004685.1 + 9462 0.66 0.896271
Target:  5'- --cUGUgGACGUUcgUGUGCCGGgauUGGCa -3'
miRNA:   3'- guuGCGaCUGCAA--ACACGGCC---AUCGc -5'
19544 5' -52.5 NC_004685.1 + 3525 0.66 0.889083
Target:  5'- uCGugGUcGACGgcgagccucUUGgucuUGCCGGUGGCGa -3'
miRNA:   3'- -GUugCGaCUGCa--------AAC----ACGGCCAUCGC- -5'
19544 5' -52.5 NC_004685.1 + 47515 0.66 0.881632
Target:  5'- gCAGCGCgugGACcacucgguagGUgagcgcgcgGUGCCaGGUGGCGg -3'
miRNA:   3'- -GUUGCGa--CUG----------CAaa-------CACGG-CCAUCGC- -5'
19544 5' -52.5 NC_004685.1 + 10487 0.67 0.873923
Target:  5'- -cAUGUUGcCGggUGUGCUGGagugGGCGg -3'
miRNA:   3'- guUGCGACuGCaaACACGGCCa---UCGC- -5'
19544 5' -52.5 NC_004685.1 + 29972 0.67 0.849313
Target:  5'- -cGCGCUGaagcuggccgccGCGgucgacGCCGGUGGCGa -3'
miRNA:   3'- guUGCGAC------------UGCaaaca-CGGCCAUCGC- -5'
19544 5' -52.5 NC_004685.1 + 42021 0.68 0.82631
Target:  5'- uCGACGCUGACGgcaacga-GGUGGCGc -3'
miRNA:   3'- -GUUGCGACUGCaaacacggCCAUCGC- -5'
19544 5' -52.5 NC_004685.1 + 32625 0.68 0.784314
Target:  5'- -cACGCUGAaGUggGUGgCGGaAGCGg -3'
miRNA:   3'- guUGCGACUgCAaaCACgGCCaUCGC- -5'
19544 5' -52.5 NC_004685.1 + 7537 0.68 0.784314
Target:  5'- uGACGUUGACG---GUGCaGGUGGCc -3'
miRNA:   3'- gUUGCGACUGCaaaCACGgCCAUCGc -5'
19544 5' -52.5 NC_004685.1 + 27109 0.69 0.75386
Target:  5'- aCGACGCggagGACGUgggcUGaugGCCGGcucUGGCGu -3'
miRNA:   3'- -GUUGCGa---CUGCAa---ACa--CGGCC---AUCGC- -5'
19544 5' -52.5 NC_004685.1 + 23467 0.69 0.75386
Target:  5'- aGACGCUGGCGUUc--GCCG--AGCGg -3'
miRNA:   3'- gUUGCGACUGCAAacaCGGCcaUCGC- -5'
19544 5' -52.5 NC_004685.1 + 2886 0.69 0.737138
Target:  5'- aCGGCGCUGGCcaggaucgggcacccGgccccaGUGCCGGUgcGGCGg -3'
miRNA:   3'- -GUUGCGACUG---------------Caaa---CACGGCCA--UCGC- -5'
19544 5' -52.5 NC_004685.1 + 32247 0.7 0.689892
Target:  5'- -cGCGCUGaacgcggccGCGUcgGccGCCGGUGGCGc -3'
miRNA:   3'- guUGCGAC---------UGCAaaCa-CGGCCAUCGC- -5'
19544 5' -52.5 NC_004685.1 + 46650 0.71 0.634935
Target:  5'- gCGGCGCUGuacggccUGUUUGUgGCgGGUGGCa -3'
miRNA:   3'- -GUUGCGACu------GCAAACA-CGgCCAUCGc -5'
19544 5' -52.5 NC_004685.1 + 66529 0.77 0.336039
Target:  5'- aCAGCGCUGGCcg-UGUGCCagucGGUGGCc -3'
miRNA:   3'- -GUUGCGACUGcaaACACGG----CCAUCGc -5'
19544 5' -52.5 NC_004685.1 + 65229 1.1 0.002274
Target:  5'- gCAACGCUGACGUUUGUGCCGGUAGCGg -3'
miRNA:   3'- -GUUGCGACUGCAAACACGGCCAUCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.