miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19545 3' -54.5 NC_004685.1 + 65326 1.1 0.001572
Target:  5'- cAUUUGACGCGAUACCCGUCGGGGACCu -3'
miRNA:   3'- -UAAACUGCGCUAUGGGCAGCCCCUGG- -5'
19545 3' -54.5 NC_004685.1 + 19815 0.78 0.213232
Target:  5'- --gUGGCGCGAcUACCUGUCGGccgacccugaGGGCCg -3'
miRNA:   3'- uaaACUGCGCU-AUGGGCAGCC----------CCUGG- -5'
19545 3' -54.5 NC_004685.1 + 4316 0.77 0.242545
Target:  5'- --aUGGCaGCGAUcgugauCCgCGUCGGGGGCCa -3'
miRNA:   3'- uaaACUG-CGCUAu-----GG-GCAGCCCCUGG- -5'
19545 3' -54.5 NC_004685.1 + 6448 0.75 0.318755
Target:  5'- --cUGGCGCGAcaACCCGUCGugcuGGGACg -3'
miRNA:   3'- uaaACUGCGCUa-UGGGCAGC----CCCUGg -5'
19545 3' -54.5 NC_004685.1 + 44341 0.73 0.411605
Target:  5'- ---cGACGCGGUGgCCGcgaUCGGGGAg- -3'
miRNA:   3'- uaaaCUGCGCUAUgGGC---AGCCCCUgg -5'
19545 3' -54.5 NC_004685.1 + 62406 0.73 0.439681
Target:  5'- --gUGAUGCGAcaggUGCcaguggucgCCGUCGGGGcACCg -3'
miRNA:   3'- uaaACUGCGCU----AUG---------GGCAGCCCC-UGG- -5'
19545 3' -54.5 NC_004685.1 + 62733 0.73 0.439681
Target:  5'- --aUGGCuGCGGgcuugACCgGcUCGGGGGCCa -3'
miRNA:   3'- uaaACUG-CGCUa----UGGgC-AGCCCCUGG- -5'
19545 3' -54.5 NC_004685.1 + 40695 0.73 0.443506
Target:  5'- ---cGaACGCGGUGCCCagcggcaggaccagcGUCGGGGucACCg -3'
miRNA:   3'- uaaaC-UGCGCUAUGGG---------------CAGCCCC--UGG- -5'
19545 3' -54.5 NC_004685.1 + 67233 0.72 0.464874
Target:  5'- ---gGAUGCuGUGCCCGcacuucgagcacgCGGGGACCu -3'
miRNA:   3'- uaaaCUGCGcUAUGGGCa------------GCCCCUGG- -5'
19545 3' -54.5 NC_004685.1 + 36172 0.72 0.468817
Target:  5'- ---gGugGCGA-ACCCGUCGcgcuGGGCCa -3'
miRNA:   3'- uaaaCugCGCUaUGGGCAGCc---CCUGG- -5'
19545 3' -54.5 NC_004685.1 + 19017 0.71 0.540301
Target:  5'- --gUGugGCGcacgcuggcUGCCCuGUCGGaGGGCCa -3'
miRNA:   3'- uaaACugCGCu--------AUGGG-CAGCC-CCUGG- -5'
19545 3' -54.5 NC_004685.1 + 33761 0.7 0.593523
Target:  5'- ---aGACGUGGUGCgUCGUCGcGGGugUc -3'
miRNA:   3'- uaaaCUGCGCUAUG-GGCAGC-CCCugG- -5'
19545 3' -54.5 NC_004685.1 + 49526 0.7 0.625895
Target:  5'- ---aGACGCGG----CGUCGGGGACa -3'
miRNA:   3'- uaaaCUGCGCUauggGCAGCCCCUGg -5'
19545 3' -54.5 NC_004685.1 + 2870 0.7 0.625895
Target:  5'- --gUGAcCGCGGgcugcuacgGCCCGaCGGGuGACCu -3'
miRNA:   3'- uaaACU-GCGCUa--------UGGGCaGCCC-CUGG- -5'
19545 3' -54.5 NC_004685.1 + 40862 0.69 0.636708
Target:  5'- ----aGCGCGGUGCUggCGUCGcGGGCCg -3'
miRNA:   3'- uaaacUGCGCUAUGG--GCAGCcCCUGG- -5'
19545 3' -54.5 NC_004685.1 + 13127 0.69 0.647518
Target:  5'- --aUGAUGCGc-GCCCGggcgacgCGGaGGGCCg -3'
miRNA:   3'- uaaACUGCGCuaUGGGCa------GCC-CCUGG- -5'
19545 3' -54.5 NC_004685.1 + 8380 0.68 0.690519
Target:  5'- --gUGAUGUGGgaucgcaccgACCUGUCGuGGGACg -3'
miRNA:   3'- uaaACUGCGCUa---------UGGGCAGC-CCCUGg -5'
19545 3' -54.5 NC_004685.1 + 53544 0.68 0.70116
Target:  5'- --cUGGCGCGGcGCggCCGacuccaGGGGACCg -3'
miRNA:   3'- uaaACUGCGCUaUG--GGCag----CCCCUGG- -5'
19545 3' -54.5 NC_004685.1 + 41018 0.68 0.722236
Target:  5'- ---cGACGCGAUcgaacGCCCGcgUCaGGGAUg -3'
miRNA:   3'- uaaaCUGCGCUA-----UGGGC--AGcCCCUGg -5'
19545 3' -54.5 NC_004685.1 + 47682 0.68 0.732649
Target:  5'- --gUGAUGCGGUcgauuucgGCCgCGgcuuuggCGGGGACUu -3'
miRNA:   3'- uaaACUGCGCUA--------UGG-GCa------GCCCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.