Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19545 | 3' | -54.5 | NC_004685.1 | + | 40862 | 0.69 | 0.636708 |
Target: 5'- ----aGCGCGGUGCUggCGUCGcGGGCCg -3' miRNA: 3'- uaaacUGCGCUAUGG--GCAGCcCCUGG- -5' |
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19545 | 3' | -54.5 | NC_004685.1 | + | 2870 | 0.7 | 0.625895 |
Target: 5'- --gUGAcCGCGGgcugcuacgGCCCGaCGGGuGACCu -3' miRNA: 3'- uaaACU-GCGCUa--------UGGGCaGCCC-CUGG- -5' |
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19545 | 3' | -54.5 | NC_004685.1 | + | 49526 | 0.7 | 0.625895 |
Target: 5'- ---aGACGCGG----CGUCGGGGACa -3' miRNA: 3'- uaaaCUGCGCUauggGCAGCCCCUGg -5' |
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19545 | 3' | -54.5 | NC_004685.1 | + | 33761 | 0.7 | 0.593523 |
Target: 5'- ---aGACGUGGUGCgUCGUCGcGGGugUc -3' miRNA: 3'- uaaaCUGCGCUAUG-GGCAGC-CCCugG- -5' |
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19545 | 3' | -54.5 | NC_004685.1 | + | 19017 | 0.71 | 0.540301 |
Target: 5'- --gUGugGCGcacgcuggcUGCCCuGUCGGaGGGCCa -3' miRNA: 3'- uaaACugCGCu--------AUGGG-CAGCC-CCUGG- -5' |
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19545 | 3' | -54.5 | NC_004685.1 | + | 36172 | 0.72 | 0.468817 |
Target: 5'- ---gGugGCGA-ACCCGUCGcgcuGGGCCa -3' miRNA: 3'- uaaaCugCGCUaUGGGCAGCc---CCUGG- -5' |
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19545 | 3' | -54.5 | NC_004685.1 | + | 67233 | 0.72 | 0.464874 |
Target: 5'- ---gGAUGCuGUGCCCGcacuucgagcacgCGGGGACCu -3' miRNA: 3'- uaaaCUGCGcUAUGGGCa------------GCCCCUGG- -5' |
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19545 | 3' | -54.5 | NC_004685.1 | + | 40695 | 0.73 | 0.443506 |
Target: 5'- ---cGaACGCGGUGCCCagcggcaggaccagcGUCGGGGucACCg -3' miRNA: 3'- uaaaC-UGCGCUAUGGG---------------CAGCCCC--UGG- -5' |
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19545 | 3' | -54.5 | NC_004685.1 | + | 62406 | 0.73 | 0.439681 |
Target: 5'- --gUGAUGCGAcaggUGCcaguggucgCCGUCGGGGcACCg -3' miRNA: 3'- uaaACUGCGCU----AUG---------GGCAGCCCC-UGG- -5' |
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19545 | 3' | -54.5 | NC_004685.1 | + | 62733 | 0.73 | 0.439681 |
Target: 5'- --aUGGCuGCGGgcuugACCgGcUCGGGGGCCa -3' miRNA: 3'- uaaACUG-CGCUa----UGGgC-AGCCCCUGG- -5' |
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19545 | 3' | -54.5 | NC_004685.1 | + | 44341 | 0.73 | 0.411605 |
Target: 5'- ---cGACGCGGUGgCCGcgaUCGGGGAg- -3' miRNA: 3'- uaaaCUGCGCUAUgGGC---AGCCCCUgg -5' |
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19545 | 3' | -54.5 | NC_004685.1 | + | 6448 | 0.75 | 0.318755 |
Target: 5'- --cUGGCGCGAcaACCCGUCGugcuGGGACg -3' miRNA: 3'- uaaACUGCGCUa-UGGGCAGC----CCCUGg -5' |
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19545 | 3' | -54.5 | NC_004685.1 | + | 4316 | 0.77 | 0.242545 |
Target: 5'- --aUGGCaGCGAUcgugauCCgCGUCGGGGGCCa -3' miRNA: 3'- uaaACUG-CGCUAu-----GG-GCAGCCCCUGG- -5' |
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19545 | 3' | -54.5 | NC_004685.1 | + | 19815 | 0.78 | 0.213232 |
Target: 5'- --gUGGCGCGAcUACCUGUCGGccgacccugaGGGCCg -3' miRNA: 3'- uaaACUGCGCU-AUGGGCAGCC----------CCUGG- -5' |
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19545 | 3' | -54.5 | NC_004685.1 | + | 65326 | 1.1 | 0.001572 |
Target: 5'- cAUUUGACGCGAUACCCGUCGGGGACCu -3' miRNA: 3'- -UAAACUGCGCUAUGGGCAGCCCCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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