miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19545 5' -59.4 NC_004685.1 + 3179 0.66 0.611823
Target:  5'- gUGGCCgCCaaGGCGCGGGagGCGcgCc -3'
miRNA:   3'- gACCGGgGG--CUGCGCCUagUGCuaGc -5'
19545 5' -59.4 NC_004685.1 + 51120 0.66 0.600396
Target:  5'- gUGGCCCuuGAUGgGGGUgGCcGAcagacccUCGg -3'
miRNA:   3'- gACCGGGggCUGCgCCUAgUG-CU-------AGC- -5'
19545 5' -59.4 NC_004685.1 + 31479 0.66 0.580734
Target:  5'- -aGGCguUCCCGcCGUGGGUgcaUGCGAUCGa -3'
miRNA:   3'- gaCCG--GGGGCuGCGCCUA---GUGCUAGC- -5'
19545 5' -59.4 NC_004685.1 + 23500 0.66 0.580734
Target:  5'- aCUGGCaggacaucgcgCCCGACGCGGG-CGacccCGGUCa -3'
miRNA:   3'- -GACCGg----------GGGCUGCGCCUaGU----GCUAGc -5'
19545 5' -59.4 NC_004685.1 + 54566 0.66 0.574551
Target:  5'- -cGGCCaUCCGACGCGuGAUCgagcagcacacccgaGCGGaccUCGg -3'
miRNA:   3'- gaCCGG-GGGCUGCGC-CUAG---------------UGCU---AGC- -5'
19545 5' -59.4 NC_004685.1 + 34118 0.67 0.560186
Target:  5'- ---uCCCCCGGCuCGGG-CGCGAUCa -3'
miRNA:   3'- gaccGGGGGCUGcGCCUaGUGCUAGc -5'
19545 5' -59.4 NC_004685.1 + 69481 0.67 0.539845
Target:  5'- --cGCCUUugaUGACGCGGggCAUGGUCGa -3'
miRNA:   3'- gacCGGGG---GCUGCGCCuaGUGCUAGC- -5'
19545 5' -59.4 NC_004685.1 + 66902 0.67 0.529767
Target:  5'- --cGUCCUCGGCgaugugcggGUGGGUCACGGUCa -3'
miRNA:   3'- gacCGGGGGCUG---------CGCCUAGUGCUAGc -5'
19545 5' -59.4 NC_004685.1 + 68493 0.67 0.528763
Target:  5'- cCUGGCCCcgccaguCCGAUGCGGGgccgccagUC-CGAUgCGg -3'
miRNA:   3'- -GACCGGG-------GGCUGCGCCU--------AGuGCUA-GC- -5'
19545 5' -59.4 NC_004685.1 + 37757 0.67 0.519759
Target:  5'- -cGGCUgCCGugGUGGAagaUCAgcaGGUCGa -3'
miRNA:   3'- gaCCGGgGGCugCGCCU---AGUg--CUAGC- -5'
19545 5' -59.4 NC_004685.1 + 62510 0.67 0.509826
Target:  5'- -gGGCCuCCCGACGgcuCGGAcacCGCGAUgGc -3'
miRNA:   3'- gaCCGG-GGGCUGC---GCCUa--GUGCUAgC- -5'
19545 5' -59.4 NC_004685.1 + 62998 0.68 0.498993
Target:  5'- -aGGCCcacgcggaagcugCCCGGCGUGGG-CGCGGugUCGa -3'
miRNA:   3'- gaCCGG-------------GGGCUGCGCCUaGUGCU--AGC- -5'
19545 5' -59.4 NC_004685.1 + 53382 0.68 0.490207
Target:  5'- gCUGGCCagcucgUCGGCGgugaGGAUCACGAugUCGc -3'
miRNA:   3'- -GACCGGg-----GGCUGCg---CCUAGUGCU--AGC- -5'
19545 5' -59.4 NC_004685.1 + 45302 0.68 0.480529
Target:  5'- -gGGCCgCgGuuguCGCGGAUCAgGAUUGc -3'
miRNA:   3'- gaCCGGgGgCu---GCGCCUAGUgCUAGC- -5'
19545 5' -59.4 NC_004685.1 + 4022 0.68 0.470946
Target:  5'- gCUGGCCUUCG-CGCGGcUCGgGuUCGg -3'
miRNA:   3'- -GACCGGGGGCuGCGCCuAGUgCuAGC- -5'
19545 5' -59.4 NC_004685.1 + 23808 0.68 0.452077
Target:  5'- aUGGCCUucaCCGuCGCGG-UgACGAUCa -3'
miRNA:   3'- gACCGGG---GGCuGCGCCuAgUGCUAGc -5'
19545 5' -59.4 NC_004685.1 + 44320 0.68 0.452077
Target:  5'- gCUGGgcgggcgcaCCCUgguCGACGCGGuggcCGCGAUCGg -3'
miRNA:   3'- -GACC---------GGGG---GCUGCGCCua--GUGCUAGC- -5'
19545 5' -59.4 NC_004685.1 + 24937 0.69 0.42457
Target:  5'- -cGGCgcucgaagacgaCCCCGACGCGGGUucgcugggcuaCAUGGUCc -3'
miRNA:   3'- gaCCG------------GGGGCUGCGCCUA-----------GUGCUAGc -5'
19545 5' -59.4 NC_004685.1 + 8314 0.7 0.389499
Target:  5'- gUGGCCCCCGccgaGCGGGUUcaccggcuACGA-CGg -3'
miRNA:   3'- gACCGGGGGCug--CGCCUAG--------UGCUaGC- -5'
19545 5' -59.4 NC_004685.1 + 45807 0.7 0.381032
Target:  5'- gCUGGCCCUgGAgGUGGcgCAgCGcAUCGg -3'
miRNA:   3'- -GACCGGGGgCUgCGCCuaGU-GC-UAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.