miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19546 3' -54.9 NC_004685.1 + 50668 0.66 0.789336
Target:  5'- aCAGGGCAGcCAGCgu--GCGCCACa-- -3'
miRNA:   3'- -GUCUUGUC-GUCGaagcUGCGGUGcga -5'
19546 3' -54.9 NC_004685.1 + 33260 0.66 0.789336
Target:  5'- gAGcuCAGgGGUUUCGccguuauCGCCGCGCa -3'
miRNA:   3'- gUCuuGUCgUCGAAGCu------GCGGUGCGa -5'
19546 3' -54.9 NC_004685.1 + 42917 0.66 0.789336
Target:  5'- aGGAAacgcCGGUAGCUccauugUgGugGCCGCGCc -3'
miRNA:   3'- gUCUU----GUCGUCGA------AgCugCGGUGCGa -5'
19546 3' -54.9 NC_004685.1 + 32265 0.66 0.769459
Target:  5'- -cGAACGGCAGg-UCGAUGCCcuUGCc -3'
miRNA:   3'- guCUUGUCGUCgaAGCUGCGGu-GCGa -5'
19546 3' -54.9 NC_004685.1 + 44249 0.66 0.769459
Target:  5'- -cGGGC-GCAGCUggGugGgCCACGCc -3'
miRNA:   3'- guCUUGuCGUCGAagCugC-GGUGCGa -5'
19546 3' -54.9 NC_004685.1 + 56809 0.66 0.769459
Target:  5'- gAGGGCAGCAGCggauUgGGCGgCGagaGCUg -3'
miRNA:   3'- gUCUUGUCGUCGa---AgCUGCgGUg--CGA- -5'
19546 3' -54.9 NC_004685.1 + 58144 0.66 0.769459
Target:  5'- cCAGcGCAgcGCAGCgcCGACGCaugaGCGCc -3'
miRNA:   3'- -GUCuUGU--CGUCGaaGCUGCGg---UGCGa -5'
19546 3' -54.9 NC_004685.1 + 47290 0.66 0.769459
Target:  5'- gCGGAGCGGUGGCgu-GugGCCGaggaGCg -3'
miRNA:   3'- -GUCUUGUCGUCGaagCugCGGUg---CGa -5'
19546 3' -54.9 NC_004685.1 + 8833 0.66 0.766426
Target:  5'- -uGAGgAGCAGgccgcacaccuguuCUUCGACGCCaacaacaaggagGCGCUg -3'
miRNA:   3'- guCUUgUCGUC--------------GAAGCUGCGG------------UGCGA- -5'
19546 3' -54.9 NC_004685.1 + 32831 0.66 0.759303
Target:  5'- -cGGACGccGCGGUgUCGA-GCCGCGCg -3'
miRNA:   3'- guCUUGU--CGUCGaAGCUgCGGUGCGa -5'
19546 3' -54.9 NC_004685.1 + 50874 0.66 0.759303
Target:  5'- gCAGccguCGGCGGUUgcgcgCGGUGCCGCGCg -3'
miRNA:   3'- -GUCuu--GUCGUCGAa----GCUGCGGUGCGa -5'
19546 3' -54.9 NC_004685.1 + 10315 0.66 0.759303
Target:  5'- gGGGACAGCucaagGGCaUCGAgGCgGCGUc -3'
miRNA:   3'- gUCUUGUCG-----UCGaAGCUgCGgUGCGa -5'
19546 3' -54.9 NC_004685.1 + 32225 0.66 0.749019
Target:  5'- -uGGGCGGCGGCauucUCGGuuCCGCGCUg -3'
miRNA:   3'- guCUUGUCGUCGa---AGCUgcGGUGCGA- -5'
19546 3' -54.9 NC_004685.1 + 17105 0.66 0.749019
Target:  5'- gAGucGCAGCGGU-UCGGCGCCGacgGCa -3'
miRNA:   3'- gUCu-UGUCGUCGaAGCUGCGGUg--CGa -5'
19546 3' -54.9 NC_004685.1 + 33009 0.66 0.749019
Target:  5'- gCAGGACGGCGuGacgUUCGugGaCGCGCUc -3'
miRNA:   3'- -GUCUUGUCGU-Cg--AAGCugCgGUGCGA- -5'
19546 3' -54.9 NC_004685.1 + 39844 0.67 0.738616
Target:  5'- aCAucACGGCGGCcaUCGACGCgCugGUg -3'
miRNA:   3'- -GUcuUGUCGUCGa-AGCUGCG-GugCGa -5'
19546 3' -54.9 NC_004685.1 + 57692 0.67 0.732323
Target:  5'- gAGAGCAucugccccacgucgaGCGcCUUCGAgcaCGCCGCGCg -3'
miRNA:   3'- gUCUUGU---------------CGUcGAAGCU---GCGGUGCGa -5'
19546 3' -54.9 NC_004685.1 + 21583 0.67 0.729163
Target:  5'- -uGGGCAGCGGCgacgccuaccuguucUCGAcCGCCGCGa- -3'
miRNA:   3'- guCUUGUCGUCGa--------------AGCU-GCGGUGCga -5'
19546 3' -54.9 NC_004685.1 + 57406 0.67 0.728107
Target:  5'- cCGGucGCGGCGGCUUCGGCcaucacgaucaUCACGCa -3'
miRNA:   3'- -GUCu-UGUCGUCGAAGCUGc----------GGUGCGa -5'
19546 3' -54.9 NC_004685.1 + 1793 0.67 0.728107
Target:  5'- cCAGuguucGACGGcCAGCg-CGACGCCgGCGCg -3'
miRNA:   3'- -GUC-----UUGUC-GUCGaaGCUGCGG-UGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.