miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19546 5' -55.3 NC_004685.1 + 56815 0.66 0.777899
Target:  5'- --cCCUCGGAUgccaGGuCUGCC-CGCCGu -3'
miRNA:   3'- cuuGGAGUUUGaa--CC-GACGGcGCGGC- -5'
19546 5' -55.3 NC_004685.1 + 37203 0.66 0.777899
Target:  5'- -uGCCUgcCAggUUgGGCagcgccgggGCCGCGCCGa -3'
miRNA:   3'- cuUGGA--GUuuGAaCCGa--------CGGCGCGGC- -5'
19546 5' -55.3 NC_004685.1 + 17907 0.66 0.777899
Target:  5'- cAACUUCAucggcaugAACUgGGacgUGCUGCGCCGa -3'
miRNA:   3'- cUUGGAGU--------UUGAaCCg--ACGGCGCGGC- -5'
19546 5' -55.3 NC_004685.1 + 53349 0.66 0.767898
Target:  5'- -cACCUCcAGCgcGGCgccggugGCCGCGgCGa -3'
miRNA:   3'- cuUGGAGuUUGaaCCGa------CGGCGCgGC- -5'
19546 5' -55.3 NC_004685.1 + 58338 0.66 0.767898
Target:  5'- cAGCCUCGGugUcggGGCgggucgccgGUCGCGCaCGg -3'
miRNA:   3'- cUUGGAGUUugAa--CCGa--------CGGCGCG-GC- -5'
19546 5' -55.3 NC_004685.1 + 9534 0.66 0.767898
Target:  5'- cGAACuCUCAGGCggaucGUccugGCCGCGCCc -3'
miRNA:   3'- -CUUG-GAGUUUGaac--CGa---CGGCGCGGc -5'
19546 5' -55.3 NC_004685.1 + 60978 0.66 0.747493
Target:  5'- -cACCUCGGugUucgGGUcgaccacgcagGCCGUGCCGg -3'
miRNA:   3'- cuUGGAGUUugAa--CCGa----------CGGCGCGGC- -5'
19546 5' -55.3 NC_004685.1 + 30238 0.66 0.747493
Target:  5'- uGGACC-CAGGCgcGGCccuUGCCGCcguuGCCGc -3'
miRNA:   3'- -CUUGGaGUUUGaaCCG---ACGGCG----CGGC- -5'
19546 5' -55.3 NC_004685.1 + 66507 0.66 0.747493
Target:  5'- -cGCCUCccgcgcCUUGGCgGCCacaGCGCUGg -3'
miRNA:   3'- cuUGGAGuuu---GAACCGaCGG---CGCGGC- -5'
19546 5' -55.3 NC_004685.1 + 50731 0.66 0.74439
Target:  5'- cGAugCUCAGGuagucggccugcacCUUGGCcGCCagcaucucgcccGCGCCGu -3'
miRNA:   3'- -CUugGAGUUU--------------GAACCGaCGG------------CGCGGC- -5'
19546 5' -55.3 NC_004685.1 + 1216 0.66 0.737111
Target:  5'- gGGGCCgcaUCGGAC-UGGCgGCCGC-CCa -3'
miRNA:   3'- -CUUGG---AGUUUGaACCGaCGGCGcGGc -5'
19546 5' -55.3 NC_004685.1 + 16560 0.67 0.716047
Target:  5'- cGGCgCUCGAccGCUggGcGCUGCCGuCGCCu -3'
miRNA:   3'- cUUG-GAGUU--UGAa-C-CGACGGC-GCGGc -5'
19546 5' -55.3 NC_004685.1 + 67250 0.67 0.716047
Target:  5'- -cGCCgUCGAACaggccaccGGCgGCCGCGUCGu -3'
miRNA:   3'- cuUGG-AGUUUGaa------CCGaCGGCGCGGC- -5'
19546 5' -55.3 NC_004685.1 + 2560 0.67 0.716047
Target:  5'- --cCCUcCAGGCUgcacuGC-GCCGCGCCGa -3'
miRNA:   3'- cuuGGA-GUUUGAac---CGaCGGCGCGGC- -5'
19546 5' -55.3 NC_004685.1 + 8883 0.67 0.705387
Target:  5'- uGGACUUCcuGCgUUGGCacauUGCgGCGCUGg -3'
miRNA:   3'- -CUUGGAGuuUG-AACCG----ACGgCGCGGC- -5'
19546 5' -55.3 NC_004685.1 + 15583 0.67 0.705387
Target:  5'- uGugCUCGGACaaG--UGCCGCGCCGa -3'
miRNA:   3'- cUugGAGUUUGaaCcgACGGCGCGGC- -5'
19546 5' -55.3 NC_004685.1 + 25440 0.67 0.694656
Target:  5'- -cGCCaagaUCGGGCcgGGCUGCUGCGgCGc -3'
miRNA:   3'- cuUGG----AGUUUGaaCCGACGGCGCgGC- -5'
19546 5' -55.3 NC_004685.1 + 64170 0.67 0.683866
Target:  5'- gGGGCCgaguucGACUUGGCggUGCCGCGgUGu -3'
miRNA:   3'- -CUUGGagu---UUGAACCG--ACGGCGCgGC- -5'
19546 5' -55.3 NC_004685.1 + 43050 0.67 0.673027
Target:  5'- uGAAgCUCcgcGGCcUGGCUGCCccagauGCGCCa -3'
miRNA:   3'- -CUUgGAGu--UUGaACCGACGG------CGCGGc -5'
19546 5' -55.3 NC_004685.1 + 17983 0.67 0.66215
Target:  5'- cGGGCCggCAG---UGGCUGCCGCaCCa -3'
miRNA:   3'- -CUUGGa-GUUugaACCGACGGCGcGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.