miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19547 5' -63.5 NC_004685.1 + 3798 0.65 0.3815
Target:  5'- uCACGGCGGCaCUGugGGCGacugucacgguccCCAcGGUg -3'
miRNA:   3'- uGUGCCGCCG-GGCugCCGU-------------GGUcCUA- -5'
19547 5' -63.5 NC_004685.1 + 44107 0.66 0.374036
Target:  5'- aACACGGcCGGCuCCGACaagcGCACCAc--- -3'
miRNA:   3'- -UGUGCC-GCCG-GGCUGc---CGUGGUccua -5'
19547 5' -63.5 NC_004685.1 + 57922 0.66 0.374036
Target:  5'- ---gGGCGGCCCGcCGuCcuuGCCGGGAUg -3'
miRNA:   3'- ugugCCGCCGGGCuGCcG---UGGUCCUA- -5'
19547 5' -63.5 NC_004685.1 + 3212 0.66 0.374036
Target:  5'- uGCGCGGCGGaaaugCCGggGCGGggUCGGGGUc -3'
miRNA:   3'- -UGUGCCGCCg----GGC--UGCCguGGUCCUA- -5'
19547 5' -63.5 NC_004685.1 + 18476 0.66 0.374036
Target:  5'- gGCAUGGUGGuCCCGuucucgugguucAUGGCACUgagccccgAGGAUu -3'
miRNA:   3'- -UGUGCCGCC-GGGC------------UGCCGUGG--------UCCUA- -5'
19547 5' -63.5 NC_004685.1 + 35395 0.66 0.365858
Target:  5'- uCGCGGaucacCGGCCCGAcCGGCACgGuGAUc -3'
miRNA:   3'- uGUGCC-----GCCGGGCU-GCCGUGgUcCUA- -5'
19547 5' -63.5 NC_004685.1 + 62761 0.66 0.357805
Target:  5'- cCACGGUGGgCUGAgGcaccugcgucGCACCGGGGa -3'
miRNA:   3'- uGUGCCGCCgGGCUgC----------CGUGGUCCUa -5'
19547 5' -63.5 NC_004685.1 + 24925 0.66 0.357805
Target:  5'- cGCGCGGUgucggcgucgGGUCCGAC--CACCAGGGc -3'
miRNA:   3'- -UGUGCCG----------CCGGGCUGccGUGGUCCUa -5'
19547 5' -63.5 NC_004685.1 + 33166 0.66 0.357805
Target:  5'- gACAcCGGUGGCaCCGGCcgguggugGGCGCCGGu-- -3'
miRNA:   3'- -UGU-GCCGCCG-GGCUG--------CCGUGGUCcua -5'
19547 5' -63.5 NC_004685.1 + 39847 0.66 0.349877
Target:  5'- uCACGGCGGCCauCGAC-GCGCUGGuGGc -3'
miRNA:   3'- uGUGCCGCCGG--GCUGcCGUGGUC-CUa -5'
19547 5' -63.5 NC_004685.1 + 39222 0.66 0.349877
Target:  5'- -gGCGGCGGCUu--CGGCGCCggcuGGGGg -3'
miRNA:   3'- ugUGCCGCCGGgcuGCCGUGG----UCCUa -5'
19547 5' -63.5 NC_004685.1 + 57080 0.66 0.347523
Target:  5'- cGCGCaGGuUGGCCCGAacauacuucaggucCGGCcgauacuucACCGGGAUg -3'
miRNA:   3'- -UGUG-CC-GCCGGGCU--------------GCCG---------UGGUCCUA- -5'
19547 5' -63.5 NC_004685.1 + 30706 0.66 0.342075
Target:  5'- --uCGGCGcGUUCGGCGGCGCagaguGGGAUg -3'
miRNA:   3'- uguGCCGC-CGGGCUGCCGUGg----UCCUA- -5'
19547 5' -63.5 NC_004685.1 + 44022 0.66 0.342075
Target:  5'- -aGCGGUGGCCCGACGcGCAgaUCAucucGAUg -3'
miRNA:   3'- ugUGCCGCCGGGCUGC-CGU--GGUc---CUA- -5'
19547 5' -63.5 NC_004685.1 + 45103 0.66 0.342075
Target:  5'- cUACGGCGGCucaCCGAUGGCcaGCCucacuucgcAGGGc -3'
miRNA:   3'- uGUGCCGCCG---GGCUGCCG--UGG---------UCCUa -5'
19547 5' -63.5 NC_004685.1 + 42650 0.66 0.342075
Target:  5'- gGCG-GGCGGCCaaGGCaGGCACC-GGAUc -3'
miRNA:   3'- -UGUgCCGCCGGg-CUG-CCGUGGuCCUA- -5'
19547 5' -63.5 NC_004685.1 + 23853 0.66 0.334399
Target:  5'- aGC-CGGuCGGCCaCGACGGUGCCGa--- -3'
miRNA:   3'- -UGuGCC-GCCGG-GCUGCCGUGGUccua -5'
19547 5' -63.5 NC_004685.1 + 9382 0.66 0.334399
Target:  5'- aACGCGGCGcugaGCCgGAUGGCgucGCCGuGGGc -3'
miRNA:   3'- -UGUGCCGC----CGGgCUGCCG---UGGU-CCUa -5'
19547 5' -63.5 NC_004685.1 + 18135 0.67 0.32685
Target:  5'- -gGCGGUGGCaCCGaccGCGGCGCUcaAGGc- -3'
miRNA:   3'- ugUGCCGCCG-GGC---UGCCGUGG--UCCua -5'
19547 5' -63.5 NC_004685.1 + 53238 0.67 0.319428
Target:  5'- cGCGCcgGGCaGGCCuaccagaaaCGGCGGCACCcccagcAGGAUg -3'
miRNA:   3'- -UGUG--CCG-CCGG---------GCUGCCGUGG------UCCUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.