miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19548 3' -56.4 NC_004685.1 + 53367 0.66 0.746523
Target:  5'- gGUGGCCGCGgcgaugcuggccagcUCGUCGgCGGugaggaucacgauGUCGCCg -3'
miRNA:   3'- gUACCGGUGU---------------GGCAGUgGUC-------------CAGUGG- -5'
19548 3' -56.4 NC_004685.1 + 27550 0.66 0.743477
Target:  5'- uCAUGGCCGCAgCGgguuCCGGGgcgUGCg -3'
miRNA:   3'- -GUACCGGUGUgGCagu-GGUCCa--GUGg -5'
19548 3' -56.4 NC_004685.1 + 31377 0.66 0.743477
Target:  5'- --aGGcCCGCGCCuUCACCGuccUCGCCg -3'
miRNA:   3'- guaCC-GGUGUGGcAGUGGUcc-AGUGG- -5'
19548 3' -56.4 NC_004685.1 + 53360 0.66 0.743477
Target:  5'- gCGUGGCacCGC-CCGUCACCAG--CGCg -3'
miRNA:   3'- -GUACCG--GUGuGGCAGUGGUCcaGUGg -5'
19548 3' -56.4 NC_004685.1 + 47190 0.66 0.743477
Target:  5'- --aGGUCACAUCGUCgACCuucuucgacaggAGGUCcagcucGCCg -3'
miRNA:   3'- guaCCGGUGUGGCAG-UGG------------UCCAG------UGG- -5'
19548 3' -56.4 NC_004685.1 + 51370 0.66 0.743477
Target:  5'- gCGUcGCCACugcgGCCGUCGCCAcugacaaUCACCu -3'
miRNA:   3'- -GUAcCGGUG----UGGCAGUGGUcc-----AGUGG- -5'
19548 3' -56.4 NC_004685.1 + 66740 0.66 0.74042
Target:  5'- -cUGGCCA-ACCGUCACgGGcGguagcugaucucgcUCACCu -3'
miRNA:   3'- guACCGGUgUGGCAGUGgUC-C--------------AGUGG- -5'
19548 3' -56.4 NC_004685.1 + 6474 0.66 0.733253
Target:  5'- --cGGCCGCAacggaGUCACCGGa--ACCa -3'
miRNA:   3'- guaCCGGUGUgg---CAGUGGUCcagUGG- -5'
19548 3' -56.4 NC_004685.1 + 48764 0.66 0.733253
Target:  5'- uCGUGGCCcaGCA-UGUCGCCaaucucgauGGGcUCACCc -3'
miRNA:   3'- -GUACCGG--UGUgGCAGUGG---------UCC-AGUGG- -5'
19548 3' -56.4 NC_004685.1 + 50797 0.66 0.733253
Target:  5'- --cGGCCACgaugccgaugAgCGUCACCGcgcGGUCAgCu -3'
miRNA:   3'- guaCCGGUG----------UgGCAGUGGU---CCAGUgG- -5'
19548 3' -56.4 NC_004685.1 + 66811 0.66 0.733253
Target:  5'- -cUGGCCAgCGCCGUgcgCACC-GGcCGCa -3'
miRNA:   3'- guACCGGU-GUGGCA---GUGGuCCaGUGg -5'
19548 3' -56.4 NC_004685.1 + 63021 0.66 0.733253
Target:  5'- --cGGCCuuGCGCagcgCGUCACCGauGG-CACCg -3'
miRNA:   3'- guaCCGG--UGUG----GCAGUGGU--CCaGUGG- -5'
19548 3' -56.4 NC_004685.1 + 45173 0.66 0.733253
Target:  5'- -uUGGUCACccagucACCGUcCACCAGGaugugCGCg -3'
miRNA:   3'- guACCGGUG------UGGCA-GUGGUCCa----GUGg -5'
19548 3' -56.4 NC_004685.1 + 68494 0.66 0.733253
Target:  5'- -cUGGCCcCGCCaGUCcgauGCgGGGcCGCCa -3'
miRNA:   3'- guACCGGuGUGG-CAG----UGgUCCaGUGG- -5'
19548 3' -56.4 NC_004685.1 + 66524 0.66 0.732225
Target:  5'- --cGGCCACagcgcugGCCGUgUGCCAgucGGUgGCCa -3'
miRNA:   3'- guaCCGGUG-------UGGCA-GUGGU---CCAgUGG- -5'
19548 3' -56.4 NC_004685.1 + 7164 0.66 0.732225
Target:  5'- gGUGGCCAUcgcgguguccgaGCCGUCGggaggcCCGGccguggcguuccuGUCACCc -3'
miRNA:   3'- gUACCGGUG------------UGGCAGU------GGUC-------------CAGUGG- -5'
19548 3' -56.4 NC_004685.1 + 43172 0.66 0.730166
Target:  5'- --cGGCgagacgagCACACCGUCcuugcgguacgggcGCuuCAGGUCGCCc -3'
miRNA:   3'- guaCCG--------GUGUGGCAG--------------UG--GUCCAGUGG- -5'
19548 3' -56.4 NC_004685.1 + 52566 0.66 0.722933
Target:  5'- --cGGCCGC-UCGUUGCCGucGG-CGCCg -3'
miRNA:   3'- guaCCGGUGuGGCAGUGGU--CCaGUGG- -5'
19548 3' -56.4 NC_004685.1 + 19040 0.66 0.722933
Target:  5'- --cGGCgGCACCGUCggagcaucccgACCgcaAGGagGCCa -3'
miRNA:   3'- guaCCGgUGUGGCAG-----------UGG---UCCagUGG- -5'
19548 3' -56.4 NC_004685.1 + 15258 0.66 0.722933
Target:  5'- gCAUGGCUAUggGCUGUCGCCgaucgagaAGGUgAUg -3'
miRNA:   3'- -GUACCGGUG--UGGCAGUGG--------UCCAgUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.