miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19548 5' -61.6 NC_004685.1 + 32283 0.66 0.447769
Target:  5'- -gGGCGGUCC-UGGUgGCgcggcgaccgcagcgGCCCUGCAg -3'
miRNA:   3'- caUCGUCGGGcGCCAgUG---------------CGGGACGU- -5'
19548 5' -61.6 NC_004685.1 + 25869 0.66 0.444027
Target:  5'- -gAGCGGCCCGCgcaGGUCgggGCGgCCgacGCu -3'
miRNA:   3'- caUCGUCGGGCG---CCAG---UGCgGGa--CGu -5'
19548 5' -61.6 NC_004685.1 + 53219 0.66 0.444027
Target:  5'- aGUAGguCAGCgaGcCGGUCGCGCCggGCAg -3'
miRNA:   3'- -CAUC--GUCGggC-GCCAGUGCGGgaCGU- -5'
19548 5' -61.6 NC_004685.1 + 57722 0.66 0.443094
Target:  5'- -gAGCAcGCCgCGCGGaccuucuUCACGUCCaGCu -3'
miRNA:   3'- caUCGU-CGG-GCGCC-------AGUGCGGGaCGu -5'
19548 5' -61.6 NC_004685.1 + 25080 0.66 0.434748
Target:  5'- --cGCAGCUCGCcgcucuggaGGUaccgGCCCUGCAu -3'
miRNA:   3'- cauCGUCGGGCG---------CCAgug-CGGGACGU- -5'
19548 5' -61.6 NC_004685.1 + 65370 0.66 0.425582
Target:  5'- --uGCGGCUCGCGGagAgGCCC-GCc -3'
miRNA:   3'- cauCGUCGGGCGCCagUgCGGGaCGu -5'
19548 5' -61.6 NC_004685.1 + 48926 0.66 0.425582
Target:  5'- aUAGCGGCgUCGaCGGcCugGCCCUuggaGCGg -3'
miRNA:   3'- cAUCGUCG-GGC-GCCaGugCGGGA----CGU- -5'
19548 5' -61.6 NC_004685.1 + 37601 0.66 0.420138
Target:  5'- -gGGguGCCCGggggaaccugcccgcCGGUCAgGCCgUGUg -3'
miRNA:   3'- caUCguCGGGC---------------GCCAGUgCGGgACGu -5'
19548 5' -61.6 NC_004685.1 + 37736 0.66 0.415633
Target:  5'- gGUGGCAGCacaCCGCcGUCaucgaacACGCCCgGCu -3'
miRNA:   3'- -CAUCGUCG---GGCGcCAG-------UGCGGGaCGu -5'
19548 5' -61.6 NC_004685.1 + 60444 0.66 0.4076
Target:  5'- -cGGCGGCCC-CGGcgCugGCCCaauccGCGc -3'
miRNA:   3'- caUCGUCGGGcGCCa-GugCGGGa----CGU- -5'
19548 5' -61.6 NC_004685.1 + 65055 0.66 0.4076
Target:  5'- -aGGCGaccauCUCGCGGUCGgGCCaCUGCu -3'
miRNA:   3'- caUCGUc----GGGCGCCAGUgCGG-GACGu -5'
19548 5' -61.6 NC_004685.1 + 66563 0.67 0.390102
Target:  5'- -cGGCGGCCCuGCGGaagcggUugGCCCucggguUGCGc -3'
miRNA:   3'- caUCGUCGGG-CGCCa-----GugCGGG------ACGU- -5'
19548 5' -61.6 NC_004685.1 + 57922 0.67 0.38154
Target:  5'- -gGGCGGCCCGCcGUCcuUGCCgggaUGCAc -3'
miRNA:   3'- caUCGUCGGGCGcCAGu-GCGGg---ACGU- -5'
19548 5' -61.6 NC_004685.1 + 37434 0.67 0.373103
Target:  5'- -cGGCGGCCgaCGCGGcCGCGUUCaGCGc -3'
miRNA:   3'- caUCGUCGG--GCGCCaGUGCGGGaCGU- -5'
19548 5' -61.6 NC_004685.1 + 44141 0.67 0.373103
Target:  5'- --uGCAGUCCGCGaUCAcCGUgCUGCGc -3'
miRNA:   3'- cauCGUCGGGCGCcAGU-GCGgGACGU- -5'
19548 5' -61.6 NC_004685.1 + 10127 0.67 0.373103
Target:  5'- --cGC-GCUCGaCGGgCACGCCCUGUu -3'
miRNA:   3'- cauCGuCGGGC-GCCaGUGCGGGACGu -5'
19548 5' -61.6 NC_004685.1 + 55942 0.67 0.356614
Target:  5'- -cAGCAGCCCgGCGaugC-CGUCCUGCc -3'
miRNA:   3'- caUCGUCGGG-CGCca-GuGCGGGACGu -5'
19548 5' -61.6 NC_004685.1 + 17444 0.67 0.348564
Target:  5'- -aGGCGGCCCugccgGUGGUCAuCGCCggUGCGc -3'
miRNA:   3'- caUCGUCGGG-----CGCCAGU-GCGGg-ACGU- -5'
19548 5' -61.6 NC_004685.1 + 67268 0.67 0.348564
Target:  5'- -cGGCGGCCgCGUcGUCugGCaCUGCGa -3'
miRNA:   3'- caUCGUCGG-GCGcCAGugCGgGACGU- -5'
19548 5' -61.6 NC_004685.1 + 28822 0.68 0.332855
Target:  5'- --cGCGGCCCGCGacgccagCAcCGCgCUGCAg -3'
miRNA:   3'- cauCGUCGGGCGCca-----GU-GCGgGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.