miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19548 5' -61.6 NC_004685.1 + 58313 0.68 0.309546
Target:  5'- --cGcCAGCCUccggcgaGUGGUCACcaGCCCUGCGc -3'
miRNA:   3'- cauC-GUCGGG-------CGCCAGUG--CGGGACGU- -5'
19548 5' -61.6 NC_004685.1 + 23289 0.68 0.317672
Target:  5'- -cGGCGaucacGCCCGCGGcCACGCCgaGa- -3'
miRNA:   3'- caUCGU-----CGGGCGCCaGUGCGGgaCgu -5'
19548 5' -61.6 NC_004685.1 + 51347 0.68 0.317672
Target:  5'- -aGGCGGCaCUGCGGUUGaagugcgcguCGCCaCUGCGg -3'
miRNA:   3'- caUCGUCG-GGCGCCAGU----------GCGG-GACGU- -5'
19548 5' -61.6 NC_004685.1 + 28822 0.68 0.332855
Target:  5'- --cGCGGCCCGCGacgccagCAcCGCgCUGCAg -3'
miRNA:   3'- cauCGUCGGGCGCca-----GU-GCGgGACGU- -5'
19548 5' -61.6 NC_004685.1 + 53154 0.68 0.310278
Target:  5'- -gAGCAcGCCCaGcCGGUUGCGCCCccaGCGg -3'
miRNA:   3'- caUCGU-CGGG-C-GCCAGUGCGGGa--CGU- -5'
19548 5' -61.6 NC_004685.1 + 43862 0.68 0.295179
Target:  5'- -cAGCGGCaucgucaccaucgUCGCGGUCgGC-CCCUGCAa -3'
miRNA:   3'- caUCGUCG-------------GGCGCCAG-UGcGGGACGU- -5'
19548 5' -61.6 NC_004685.1 + 39289 0.69 0.268669
Target:  5'- -cGGCccGCCCGuUGGUCGCGgCCCcgGCAa -3'
miRNA:   3'- caUCGu-CGGGC-GCCAGUGC-GGGa-CGU- -5'
19548 5' -61.6 NC_004685.1 + 60933 0.69 0.284749
Target:  5'- -cGGCAGCUCcgguaugucgucgaGCucggggaugccgauGGUCugGCCCUGCGa -3'
miRNA:   3'- caUCGUCGGG--------------CG--------------CCAGugCGGGACGU- -5'
19548 5' -61.6 NC_004685.1 + 19222 0.69 0.275278
Target:  5'- -aAGUuuGGCCUGCGGuUCGCGCCgaguCUGCc -3'
miRNA:   3'- caUCG--UCGGGCGCC-AGUGCGG----GACGu -5'
19548 5' -61.6 NC_004685.1 + 24147 0.7 0.225949
Target:  5'- cGUAGUGGCCCGCGuGaucacCGCGCUCaGCAc -3'
miRNA:   3'- -CAUCGUCGGGCGC-Ca----GUGCGGGaCGU- -5'
19548 5' -61.6 NC_004685.1 + 57839 0.72 0.17503
Target:  5'- -gAGCAgGUCgGCGGUCGCGCCCa--- -3'
miRNA:   3'- caUCGU-CGGgCGCCAGUGCGGGacgu -5'
19548 5' -61.6 NC_004685.1 + 51630 0.72 0.179623
Target:  5'- -aGGUGGCCCaCGGUgAaGCCCUGCAu -3'
miRNA:   3'- caUCGUCGGGcGCCAgUgCGGGACGU- -5'
19548 5' -61.6 NC_004685.1 + 31672 0.91 0.006947
Target:  5'- aGUGGaauguGCCCGCGGUCGCGCCCUGCGu -3'
miRNA:   3'- -CAUCgu---CGGGCGCCAGUGCGGGACGU- -5'
19548 5' -61.6 NC_004685.1 + 66822 1.07 0.000366
Target:  5'- cGUAGCAGCCCGCGGUCACGCCCUGCAc -3'
miRNA:   3'- -CAUCGUCGGGCGCCAGUGCGGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.