Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19548 | 5' | -61.6 | NC_004685.1 | + | 32283 | 0.66 | 0.447769 |
Target: 5'- -gGGCGGUCC-UGGUgGCgcggcgaccgcagcgGCCCUGCAg -3' miRNA: 3'- caUCGUCGGGcGCCAgUG---------------CGGGACGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 25869 | 0.66 | 0.444027 |
Target: 5'- -gAGCGGCCCGCgcaGGUCgggGCGgCCgacGCu -3' miRNA: 3'- caUCGUCGGGCG---CCAG---UGCgGGa--CGu -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 53219 | 0.66 | 0.444027 |
Target: 5'- aGUAGguCAGCgaGcCGGUCGCGCCggGCAg -3' miRNA: 3'- -CAUC--GUCGggC-GCCAGUGCGGgaCGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 57722 | 0.66 | 0.443094 |
Target: 5'- -gAGCAcGCCgCGCGGaccuucuUCACGUCCaGCu -3' miRNA: 3'- caUCGU-CGG-GCGCC-------AGUGCGGGaCGu -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 25080 | 0.66 | 0.434748 |
Target: 5'- --cGCAGCUCGCcgcucuggaGGUaccgGCCCUGCAu -3' miRNA: 3'- cauCGUCGGGCG---------CCAgug-CGGGACGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 65370 | 0.66 | 0.425582 |
Target: 5'- --uGCGGCUCGCGGagAgGCCC-GCc -3' miRNA: 3'- cauCGUCGGGCGCCagUgCGGGaCGu -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 48926 | 0.66 | 0.425582 |
Target: 5'- aUAGCGGCgUCGaCGGcCugGCCCUuggaGCGg -3' miRNA: 3'- cAUCGUCG-GGC-GCCaGugCGGGA----CGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 37601 | 0.66 | 0.420138 |
Target: 5'- -gGGguGCCCGggggaaccugcccgcCGGUCAgGCCgUGUg -3' miRNA: 3'- caUCguCGGGC---------------GCCAGUgCGGgACGu -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 37736 | 0.66 | 0.415633 |
Target: 5'- gGUGGCAGCacaCCGCcGUCaucgaacACGCCCgGCu -3' miRNA: 3'- -CAUCGUCG---GGCGcCAG-------UGCGGGaCGu -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 60444 | 0.66 | 0.4076 |
Target: 5'- -cGGCGGCCC-CGGcgCugGCCCaauccGCGc -3' miRNA: 3'- caUCGUCGGGcGCCa-GugCGGGa----CGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 65055 | 0.66 | 0.4076 |
Target: 5'- -aGGCGaccauCUCGCGGUCGgGCCaCUGCu -3' miRNA: 3'- caUCGUc----GGGCGCCAGUgCGG-GACGu -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 66563 | 0.67 | 0.390102 |
Target: 5'- -cGGCGGCCCuGCGGaagcggUugGCCCucggguUGCGc -3' miRNA: 3'- caUCGUCGGG-CGCCa-----GugCGGG------ACGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 57922 | 0.67 | 0.38154 |
Target: 5'- -gGGCGGCCCGCcGUCcuUGCCgggaUGCAc -3' miRNA: 3'- caUCGUCGGGCGcCAGu-GCGGg---ACGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 37434 | 0.67 | 0.373103 |
Target: 5'- -cGGCGGCCgaCGCGGcCGCGUUCaGCGc -3' miRNA: 3'- caUCGUCGG--GCGCCaGUGCGGGaCGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 44141 | 0.67 | 0.373103 |
Target: 5'- --uGCAGUCCGCGaUCAcCGUgCUGCGc -3' miRNA: 3'- cauCGUCGGGCGCcAGU-GCGgGACGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 10127 | 0.67 | 0.373103 |
Target: 5'- --cGC-GCUCGaCGGgCACGCCCUGUu -3' miRNA: 3'- cauCGuCGGGC-GCCaGUGCGGGACGu -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 55942 | 0.67 | 0.356614 |
Target: 5'- -cAGCAGCCCgGCGaugC-CGUCCUGCc -3' miRNA: 3'- caUCGUCGGG-CGCca-GuGCGGGACGu -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 17444 | 0.67 | 0.348564 |
Target: 5'- -aGGCGGCCCugccgGUGGUCAuCGCCggUGCGc -3' miRNA: 3'- caUCGUCGGG-----CGCCAGU-GCGGg-ACGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 67268 | 0.67 | 0.348564 |
Target: 5'- -cGGCGGCCgCGUcGUCugGCaCUGCGa -3' miRNA: 3'- caUCGUCGG-GCGcCAGugCGgGACGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 28822 | 0.68 | 0.332855 |
Target: 5'- --cGCGGCCCGCGacgccagCAcCGCgCUGCAg -3' miRNA: 3'- cauCGUCGGGCGCca-----GU-GCGgGACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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