Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19548 | 5' | -61.6 | NC_004685.1 | + | 23289 | 0.68 | 0.317672 |
Target: 5'- -cGGCGaucacGCCCGCGGcCACGCCgaGa- -3' miRNA: 3'- caUCGU-----CGGGCGCCaGUGCGGgaCgu -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 51347 | 0.68 | 0.317672 |
Target: 5'- -aGGCGGCaCUGCGGUUGaagugcgcguCGCCaCUGCGg -3' miRNA: 3'- caUCGUCG-GGCGCCAGU----------GCGG-GACGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 53154 | 0.68 | 0.310278 |
Target: 5'- -gAGCAcGCCCaGcCGGUUGCGCCCccaGCGg -3' miRNA: 3'- caUCGU-CGGG-C-GCCAGUGCGGGa--CGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 58313 | 0.68 | 0.309546 |
Target: 5'- --cGcCAGCCUccggcgaGUGGUCACcaGCCCUGCGc -3' miRNA: 3'- cauC-GUCGGG-------CGCCAGUG--CGGGACGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 40775 | 0.68 | 0.308085 |
Target: 5'- -cAGCGGCCCGggucgaaguccUGGUUccggcggccggucaGCGCCUUGCGg -3' miRNA: 3'- caUCGUCGGGC-----------GCCAG--------------UGCGGGACGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 43862 | 0.68 | 0.295179 |
Target: 5'- -cAGCGGCaucgucaccaucgUCGCGGUCgGC-CCCUGCAa -3' miRNA: 3'- caUCGUCG-------------GGCGCCAG-UGcGGGACGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 60933 | 0.69 | 0.284749 |
Target: 5'- -cGGCAGCUCcgguaugucgucgaGCucggggaugccgauGGUCugGCCCUGCGa -3' miRNA: 3'- caUCGUCGGG--------------CG--------------CCAGugCGGGACGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 19222 | 0.69 | 0.275278 |
Target: 5'- -aAGUuuGGCCUGCGGuUCGCGCCgaguCUGCc -3' miRNA: 3'- caUCG--UCGGGCGCC-AGUGCGG----GACGu -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 39289 | 0.69 | 0.268669 |
Target: 5'- -cGGCccGCCCGuUGGUCGCGgCCCcgGCAa -3' miRNA: 3'- caUCGu-CGGGC-GCCAGUGC-GGGa-CGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 24147 | 0.7 | 0.225949 |
Target: 5'- cGUAGUGGCCCGCGuGaucacCGCGCUCaGCAc -3' miRNA: 3'- -CAUCGUCGGGCGC-Ca----GUGCGGGaCGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 51630 | 0.72 | 0.179623 |
Target: 5'- -aGGUGGCCCaCGGUgAaGCCCUGCAu -3' miRNA: 3'- caUCGUCGGGcGCCAgUgCGGGACGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 57839 | 0.72 | 0.17503 |
Target: 5'- -gAGCAgGUCgGCGGUCGCGCCCa--- -3' miRNA: 3'- caUCGU-CGGgCGCCAGUGCGGGacgu -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 31672 | 0.91 | 0.006947 |
Target: 5'- aGUGGaauguGCCCGCGGUCGCGCCCUGCGu -3' miRNA: 3'- -CAUCgu---CGGGCGCCAGUGCGGGACGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 66822 | 1.07 | 0.000366 |
Target: 5'- cGUAGCAGCCCGCGGUCACGCCCUGCAc -3' miRNA: 3'- -CAUCGUCGGGCGCCAGUGCGGGACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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