miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19548 5' -61.6 NC_004685.1 + 10127 0.67 0.373103
Target:  5'- --cGC-GCUCGaCGGgCACGCCCUGUu -3'
miRNA:   3'- cauCGuCGGGC-GCCaGUGCGGGACGu -5'
19548 5' -61.6 NC_004685.1 + 17444 0.67 0.348564
Target:  5'- -aGGCGGCCCugccgGUGGUCAuCGCCggUGCGc -3'
miRNA:   3'- caUCGUCGGG-----CGCCAGU-GCGGg-ACGU- -5'
19548 5' -61.6 NC_004685.1 + 19222 0.69 0.275278
Target:  5'- -aAGUuuGGCCUGCGGuUCGCGCCgaguCUGCc -3'
miRNA:   3'- caUCG--UCGGGCGCC-AGUGCGG----GACGu -5'
19548 5' -61.6 NC_004685.1 + 23289 0.68 0.317672
Target:  5'- -cGGCGaucacGCCCGCGGcCACGCCgaGa- -3'
miRNA:   3'- caUCGU-----CGGGCGCCaGUGCGGgaCgu -5'
19548 5' -61.6 NC_004685.1 + 24147 0.7 0.225949
Target:  5'- cGUAGUGGCCCGCGuGaucacCGCGCUCaGCAc -3'
miRNA:   3'- -CAUCGUCGGGCGC-Ca----GUGCGGGaCGU- -5'
19548 5' -61.6 NC_004685.1 + 25080 0.66 0.434748
Target:  5'- --cGCAGCUCGCcgcucuggaGGUaccgGCCCUGCAu -3'
miRNA:   3'- cauCGUCGGGCG---------CCAgug-CGGGACGU- -5'
19548 5' -61.6 NC_004685.1 + 25869 0.66 0.444027
Target:  5'- -gAGCGGCCCGCgcaGGUCgggGCGgCCgacGCu -3'
miRNA:   3'- caUCGUCGGGCG---CCAG---UGCgGGa--CGu -5'
19548 5' -61.6 NC_004685.1 + 28822 0.68 0.332855
Target:  5'- --cGCGGCCCGCGacgccagCAcCGCgCUGCAg -3'
miRNA:   3'- cauCGUCGGGCGCca-----GU-GCGgGACGU- -5'
19548 5' -61.6 NC_004685.1 + 31672 0.91 0.006947
Target:  5'- aGUGGaauguGCCCGCGGUCGCGCCCUGCGu -3'
miRNA:   3'- -CAUCgu---CGGGCGCCAGUGCGGGACGU- -5'
19548 5' -61.6 NC_004685.1 + 32283 0.66 0.447769
Target:  5'- -gGGCGGUCC-UGGUgGCgcggcgaccgcagcgGCCCUGCAg -3'
miRNA:   3'- caUCGUCGGGcGCCAgUG---------------CGGGACGU- -5'
19548 5' -61.6 NC_004685.1 + 37434 0.67 0.373103
Target:  5'- -cGGCGGCCgaCGCGGcCGCGUUCaGCGc -3'
miRNA:   3'- caUCGUCGG--GCGCCaGUGCGGGaCGU- -5'
19548 5' -61.6 NC_004685.1 + 37601 0.66 0.420138
Target:  5'- -gGGguGCCCGggggaaccugcccgcCGGUCAgGCCgUGUg -3'
miRNA:   3'- caUCguCGGGC---------------GCCAGUgCGGgACGu -5'
19548 5' -61.6 NC_004685.1 + 37736 0.66 0.415633
Target:  5'- gGUGGCAGCacaCCGCcGUCaucgaacACGCCCgGCu -3'
miRNA:   3'- -CAUCGUCG---GGCGcCAG-------UGCGGGaCGu -5'
19548 5' -61.6 NC_004685.1 + 39289 0.69 0.268669
Target:  5'- -cGGCccGCCCGuUGGUCGCGgCCCcgGCAa -3'
miRNA:   3'- caUCGu-CGGGC-GCCAGUGC-GGGa-CGU- -5'
19548 5' -61.6 NC_004685.1 + 40775 0.68 0.308085
Target:  5'- -cAGCGGCCCGggucgaaguccUGGUUccggcggccggucaGCGCCUUGCGg -3'
miRNA:   3'- caUCGUCGGGC-----------GCCAG--------------UGCGGGACGU- -5'
19548 5' -61.6 NC_004685.1 + 43862 0.68 0.295179
Target:  5'- -cAGCGGCaucgucaccaucgUCGCGGUCgGC-CCCUGCAa -3'
miRNA:   3'- caUCGUCG-------------GGCGCCAG-UGcGGGACGU- -5'
19548 5' -61.6 NC_004685.1 + 44141 0.67 0.373103
Target:  5'- --uGCAGUCCGCGaUCAcCGUgCUGCGc -3'
miRNA:   3'- cauCGUCGGGCGCcAGU-GCGgGACGU- -5'
19548 5' -61.6 NC_004685.1 + 48926 0.66 0.425582
Target:  5'- aUAGCGGCgUCGaCGGcCugGCCCUuggaGCGg -3'
miRNA:   3'- cAUCGUCG-GGC-GCCaGugCGGGA----CGU- -5'
19548 5' -61.6 NC_004685.1 + 51347 0.68 0.317672
Target:  5'- -aGGCGGCaCUGCGGUUGaagugcgcguCGCCaCUGCGg -3'
miRNA:   3'- caUCGUCG-GGCGCCAGU----------GCGG-GACGU- -5'
19548 5' -61.6 NC_004685.1 + 51630 0.72 0.179623
Target:  5'- -aGGUGGCCCaCGGUgAaGCCCUGCAu -3'
miRNA:   3'- caUCGUCGGGcGCCAgUgCGGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.