Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19548 | 5' | -61.6 | NC_004685.1 | + | 53154 | 0.68 | 0.310278 |
Target: 5'- -gAGCAcGCCCaGcCGGUUGCGCCCccaGCGg -3' miRNA: 3'- caUCGU-CGGG-C-GCCAGUGCGGGa--CGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 53219 | 0.66 | 0.444027 |
Target: 5'- aGUAGguCAGCgaGcCGGUCGCGCCggGCAg -3' miRNA: 3'- -CAUC--GUCGggC-GCCAGUGCGGgaCGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 55942 | 0.67 | 0.356614 |
Target: 5'- -cAGCAGCCCgGCGaugC-CGUCCUGCc -3' miRNA: 3'- caUCGUCGGG-CGCca-GuGCGGGACGu -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 57722 | 0.66 | 0.443094 |
Target: 5'- -gAGCAcGCCgCGCGGaccuucuUCACGUCCaGCu -3' miRNA: 3'- caUCGU-CGG-GCGCC-------AGUGCGGGaCGu -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 57839 | 0.72 | 0.17503 |
Target: 5'- -gAGCAgGUCgGCGGUCGCGCCCa--- -3' miRNA: 3'- caUCGU-CGGgCGCCAGUGCGGGacgu -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 57922 | 0.67 | 0.38154 |
Target: 5'- -gGGCGGCCCGCcGUCcuUGCCgggaUGCAc -3' miRNA: 3'- caUCGUCGGGCGcCAGu-GCGGg---ACGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 58313 | 0.68 | 0.309546 |
Target: 5'- --cGcCAGCCUccggcgaGUGGUCACcaGCCCUGCGc -3' miRNA: 3'- cauC-GUCGGG-------CGCCAGUG--CGGGACGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 60444 | 0.66 | 0.4076 |
Target: 5'- -cGGCGGCCC-CGGcgCugGCCCaauccGCGc -3' miRNA: 3'- caUCGUCGGGcGCCa-GugCGGGa----CGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 60933 | 0.69 | 0.284749 |
Target: 5'- -cGGCAGCUCcgguaugucgucgaGCucggggaugccgauGGUCugGCCCUGCGa -3' miRNA: 3'- caUCGUCGGG--------------CG--------------CCAGugCGGGACGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 65055 | 0.66 | 0.4076 |
Target: 5'- -aGGCGaccauCUCGCGGUCGgGCCaCUGCu -3' miRNA: 3'- caUCGUc----GGGCGCCAGUgCGG-GACGu -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 65370 | 0.66 | 0.425582 |
Target: 5'- --uGCGGCUCGCGGagAgGCCC-GCc -3' miRNA: 3'- cauCGUCGGGCGCCagUgCGGGaCGu -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 66563 | 0.67 | 0.390102 |
Target: 5'- -cGGCGGCCCuGCGGaagcggUugGCCCucggguUGCGc -3' miRNA: 3'- caUCGUCGGG-CGCCa-----GugCGGG------ACGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 66822 | 1.07 | 0.000366 |
Target: 5'- cGUAGCAGCCCGCGGUCACGCCCUGCAc -3' miRNA: 3'- -CAUCGUCGGGCGCCAGUGCGGGACGU- -5' |
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19548 | 5' | -61.6 | NC_004685.1 | + | 67268 | 0.67 | 0.348564 |
Target: 5'- -cGGCGGCCgCGUcGUCugGCaCUGCGa -3' miRNA: 3'- caUCGUCGG-GCGcCAGugCGgGACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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