miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19549 3' -57.2 NC_004685.1 + 2910 0.66 0.670975
Target:  5'- cGGUGU-GGCCauGCCGGCCCgAg---- -3'
miRNA:   3'- uCUACAuCCGG--UGGCCGGGgUaguag -5'
19549 3' -57.2 NC_004685.1 + 66348 0.66 0.638631
Target:  5'- uGGAgacgGGGCCACgccgaaauCGGCCaguuugCCGUCGUCg -3'
miRNA:   3'- -UCUaca-UCCGGUG--------GCCGG------GGUAGUAG- -5'
19549 3' -57.2 NC_004685.1 + 58554 0.67 0.606235
Target:  5'- uGGUGgcgucGGCCACCGcGCCCagGUCGa- -3'
miRNA:   3'- uCUACau---CCGGUGGC-CGGGg-UAGUag -5'
19549 3' -57.2 NC_004685.1 + 6863 0.67 0.595467
Target:  5'- cGGGUGccccGGCUcaGCCGGCCCCGgu-UCc -3'
miRNA:   3'- -UCUACau--CCGG--UGGCCGGGGUaguAG- -5'
19549 3' -57.2 NC_004685.1 + 27118 0.67 0.58473
Target:  5'- aGGAcGUGGGCUgaugGCCGGCUCUggCGUg -3'
miRNA:   3'- -UCUaCAUCCGG----UGGCCGGGGuaGUAg -5'
19549 3' -57.2 NC_004685.1 + 68528 0.67 0.563376
Target:  5'- cGAUGcGGGgCugUGGCCCCGgccaGUCc -3'
miRNA:   3'- uCUACaUCCgGugGCCGGGGUag--UAG- -5'
19549 3' -57.2 NC_004685.1 + 19181 0.67 0.563376
Target:  5'- uGGAUGgcuccgGGGCUGCCGGCCgguUCGUg -3'
miRNA:   3'- -UCUACa-----UCCGGUGGCCGGgguAGUAg -5'
19549 3' -57.2 NC_004685.1 + 55319 0.68 0.552776
Target:  5'- ---aGUugcGGCCAgCGGCCCgCAUCAg- -3'
miRNA:   3'- ucuaCAu--CCGGUgGCCGGG-GUAGUag -5'
19549 3' -57.2 NC_004685.1 + 25931 0.68 0.552776
Target:  5'- cGGUGUGGuGCCACaUGaGCCCCAgauuuccuUCAUg -3'
miRNA:   3'- uCUACAUC-CGGUG-GC-CGGGGU--------AGUAg -5'
19549 3' -57.2 NC_004685.1 + 3288 0.68 0.542237
Target:  5'- uGGUGccgucGGGCCGCCGuGUgCgCAUCGUCg -3'
miRNA:   3'- uCUACa----UCCGGUGGC-CGgG-GUAGUAG- -5'
19549 3' -57.2 NC_004685.1 + 1152 0.69 0.490675
Target:  5'- cGGAcUGgccgGGGCCACa-GCCCCG-CAUCg -3'
miRNA:   3'- -UCU-ACa---UCCGGUGgcCGGGGUaGUAG- -5'
19549 3' -57.2 NC_004685.1 + 19122 0.69 0.480631
Target:  5'- --cUGgAGGCggCGCCGGCgCCCAUCGUg -3'
miRNA:   3'- ucuACaUCCG--GUGGCCG-GGGUAGUAg -5'
19549 3' -57.2 NC_004685.1 + 27859 0.69 0.470688
Target:  5'- cGcgGaGGGUCGCCcucGGCCCCA-CGUCg -3'
miRNA:   3'- uCuaCaUCCGGUGG---CCGGGGUaGUAG- -5'
19549 3' -57.2 NC_004685.1 + 14367 0.69 0.46085
Target:  5'- uGAUGcGGGCCGCUGGCCgCAa---- -3'
miRNA:   3'- uCUACaUCCGGUGGCCGGgGUaguag -5'
19549 3' -57.2 NC_004685.1 + 31959 0.71 0.36058
Target:  5'- cGGUGUGcuGCCAcCCGGCCCgucgauCGUCGUCa -3'
miRNA:   3'- uCUACAUc-CGGU-GGCCGGG------GUAGUAG- -5'
19549 3' -57.2 NC_004685.1 + 52964 0.72 0.336
Target:  5'- cGGUGUAGGCgGuCgGGUCCCAgucgccggUCAUCg -3'
miRNA:   3'- uCUACAUCCGgU-GgCCGGGGU--------AGUAG- -5'
19549 3' -57.2 NC_004685.1 + 67260 0.72 0.320305
Target:  5'- -----cAGGCCACCGGCggCCgCGUCGUCu -3'
miRNA:   3'- ucuacaUCCGGUGGCCG--GG-GUAGUAG- -5'
19549 3' -57.2 NC_004685.1 + 1226 0.73 0.283496
Target:  5'- cGGAcUGgcGGCCGCCcaucggacuggcGGCCCCG-CAUCg -3'
miRNA:   3'- -UCU-ACauCCGGUGG------------CCGGGGUaGUAG- -5'
19549 3' -57.2 NC_004685.1 + 50322 0.86 0.036157
Target:  5'- uGGGUGUAGGCCACCcgguGCCCCuGUCGUCg -3'
miRNA:   3'- -UCUACAUCCGGUGGc---CGGGG-UAGUAG- -5'
19549 3' -57.2 NC_004685.1 + 66961 1.1 0.000678
Target:  5'- uAGAUGUAGGCCACCGGCCCCAUCAUCa -3'
miRNA:   3'- -UCUACAUCCGGUGGCCGGGGUAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.