miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19549 5' -61.5 NC_004685.1 + 35107 0.66 0.469654
Target:  5'- ----aGGCGcuCGGCAGCgucGGCCGCGgUCa -3'
miRNA:   3'- cacuaCCGCc-GCUGUCG---CCGGCGC-AG- -5'
19549 5' -61.5 NC_004685.1 + 50457 0.66 0.469654
Target:  5'- aUGAUGGCGGgGcugguCAGCcaGUgCGCGUCg -3'
miRNA:   3'- cACUACCGCCgCu----GUCGc-CG-GCGCAG- -5'
19549 5' -61.5 NC_004685.1 + 67256 0.66 0.460143
Target:  5'- -cGAaca-GGCcacCGGCGGCCGCGUCg -3'
miRNA:   3'- caCUaccgCCGcu-GUCGCCGGCGCAG- -5'
19549 5' -61.5 NC_004685.1 + 21563 0.66 0.460143
Target:  5'- gGUGGUcaugucGGCGGCGcuggGCAGCGGCgaCGCc-- -3'
miRNA:   3'- -CACUA------CCGCCGC----UGUCGCCG--GCGcag -5'
19549 5' -61.5 NC_004685.1 + 41433 0.66 0.450736
Target:  5'- -gGAcUGGCGGUGACAccgaaCGGCgGCGa- -3'
miRNA:   3'- caCU-ACCGCCGCUGUc----GCCGgCGCag -5'
19549 5' -61.5 NC_004685.1 + 38524 0.66 0.450736
Target:  5'- ----aGGacCGGCG-CGGCGGCgaGCGUCg -3'
miRNA:   3'- cacuaCC--GCCGCuGUCGCCGg-CGCAG- -5'
19549 5' -61.5 NC_004685.1 + 34417 0.66 0.447934
Target:  5'- -aGGUGGagaaCGGUGACGcggacacgcguguuGUGGCCGCGg- -3'
miRNA:   3'- caCUACC----GCCGCUGU--------------CGCCGGCGCag -5'
19549 5' -61.5 NC_004685.1 + 21370 0.66 0.441435
Target:  5'- -cGAucUGGCaGGCGGCGG-GuGCCGUGUa -3'
miRNA:   3'- caCU--ACCG-CCGCUGUCgC-CGGCGCAg -5'
19549 5' -61.5 NC_004685.1 + 37847 0.66 0.441435
Target:  5'- -aGGUGGCcgaguacagcGGCGucggagcguCAGCcaGCCGCGUCg -3'
miRNA:   3'- caCUACCG----------CCGCu--------GUCGc-CGGCGCAG- -5'
19549 5' -61.5 NC_004685.1 + 16721 0.66 0.431331
Target:  5'- aGUGA-GGCGGCcGCggugcggcuguccGGCGGUgGCGUg -3'
miRNA:   3'- -CACUaCCGCCGcUG-------------UCGCCGgCGCAg -5'
19549 5' -61.5 NC_004685.1 + 46792 0.66 0.423165
Target:  5'- ----cGGCGGUcucccgaaacGuCAGCGGCCGaUGUCg -3'
miRNA:   3'- cacuaCCGCCG----------CuGUCGCCGGC-GCAG- -5'
19549 5' -61.5 NC_004685.1 + 33965 0.66 0.421363
Target:  5'- cUGG-GGCGGCGACAacgccacgcaaacGCagucggggaugcuGcGCCGCGUCa -3'
miRNA:   3'- cACUaCCGCCGCUGU-------------CG-------------C-CGGCGCAG- -5'
19549 5' -61.5 NC_004685.1 + 21450 0.66 0.420464
Target:  5'- ----aGGCGGCuACuGGCGGCCgguguucgacacggGCGUCg -3'
miRNA:   3'- cacuaCCGCCGcUG-UCGCCGG--------------CGCAG- -5'
19549 5' -61.5 NC_004685.1 + 39279 0.67 0.405357
Target:  5'- ---uUGGCGGUcAUGGUGGCCGgGUUc -3'
miRNA:   3'- cacuACCGCCGcUGUCGCCGGCgCAG- -5'
19549 5' -61.5 NC_004685.1 + 19122 0.67 0.405357
Target:  5'- cUGGaGGCGGCGcCGGCGcccaUCGUGUCg -3'
miRNA:   3'- cACUaCCGCCGCuGUCGCc---GGCGCAG- -5'
19549 5' -61.5 NC_004685.1 + 119 0.67 0.396631
Target:  5'- -cGGUaGCGGCGACcggcGCGGgCGCGg- -3'
miRNA:   3'- caCUAcCGCCGCUGu---CGCCgGCGCag -5'
19549 5' -61.5 NC_004685.1 + 20338 0.67 0.396631
Target:  5'- ----cGGaCGGCGGCGGCGaaccgcugcccGCCGCGg- -3'
miRNA:   3'- cacuaCC-GCCGCUGUCGC-----------CGGCGCag -5'
19549 5' -61.5 NC_004685.1 + 59819 0.67 0.395765
Target:  5'- -cGAUGGCGGUGaACAgguccugcucgguGCGcGCCuCGUCu -3'
miRNA:   3'- caCUACCGCCGC-UGU-------------CGC-CGGcGCAG- -5'
19549 5' -61.5 NC_004685.1 + 10298 0.67 0.395765
Target:  5'- -cGAUGaguaccgcgaGCGGgGACAGCucaagggcaucgaGGCgGCGUCg -3'
miRNA:   3'- caCUAC----------CGCCgCUGUCG-------------CCGgCGCAG- -5'
19549 5' -61.5 NC_004685.1 + 67339 0.67 0.388027
Target:  5'- -gGGUGcccaaccuCGGCGAC-GUGcGCCGCGUCa -3'
miRNA:   3'- caCUACc-------GCCGCUGuCGC-CGGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.