miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19550 3' -50.9 NC_004685.1 + 62623 0.66 0.946608
Target:  5'- --aGCGGGUAu--UCGAGGGGGAucagaACGg -3'
miRNA:   3'- gugCGCCCGUuucAGUUUCUCCU-----UGC- -5'
19550 3' -50.9 NC_004685.1 + 22675 0.66 0.946608
Target:  5'- cCGCG-GGGCcacuGUCGAGGAGGuugucaccGCGg -3'
miRNA:   3'- -GUGCgCCCGuuu-CAGUUUCUCCu-------UGC- -5'
19550 3' -50.9 NC_004685.1 + 32196 0.66 0.941718
Target:  5'- gUACGCGGGCuacGGcggcggcuUCAAGGuGGGcgGCGg -3'
miRNA:   3'- -GUGCGCCCGuu-UC--------AGUUUCuCCU--UGC- -5'
19550 3' -50.9 NC_004685.1 + 45693 0.66 0.931091
Target:  5'- uCGgGCuGGGCAAGcUCAcccccGAGGAACGg -3'
miRNA:   3'- -GUgCG-CCCGUUUcAGUuu---CUCCUUGC- -5'
19550 3' -50.9 NC_004685.1 + 44129 0.66 0.931091
Target:  5'- gGCGCGGcGCAGGG-CAAAu-GGGACc -3'
miRNA:   3'- gUGCGCC-CGUUUCaGUUUcuCCUUGc -5'
19550 3' -50.9 NC_004685.1 + 37217 0.66 0.931091
Target:  5'- uGCGCGGGCAGcuGUUGGAGAGc---- -3'
miRNA:   3'- gUGCGCCCGUUu-CAGUUUCUCcuugc -5'
19550 3' -50.9 NC_004685.1 + 25770 0.67 0.906427
Target:  5'- gUugGUGGGCAGuc-CAGGGuAGGAACc -3'
miRNA:   3'- -GugCGCCCGUUucaGUUUC-UCCUUGc -5'
19550 3' -50.9 NC_004685.1 + 3223 0.67 0.899556
Target:  5'- aAUGCcgGGGCGGGGUCGGGGucGGGCc -3'
miRNA:   3'- gUGCG--CCCGUUUCAGUUUCucCUUGc -5'
19550 3' -50.9 NC_004685.1 + 18418 0.67 0.899556
Target:  5'- aGCGaGGGU---GUCGAGGuGGAGCGg -3'
miRNA:   3'- gUGCgCCCGuuuCAGUUUCuCCUUGC- -5'
19550 3' -50.9 NC_004685.1 + 12906 0.67 0.899556
Target:  5'- aGCG-GGGCuGAAGUCGAGGAGcaGGugGu -3'
miRNA:   3'- gUGCgCCCG-UUUCAGUUUCUC--CUugC- -5'
19550 3' -50.9 NC_004685.1 + 15382 0.68 0.892409
Target:  5'- aCACaaucUGGG---AGUCGAAGGGGAACGg -3'
miRNA:   3'- -GUGc---GCCCguuUCAGUUUCUCCUUGC- -5'
19550 3' -50.9 NC_004685.1 + 62553 0.68 0.877305
Target:  5'- aCACGUGGuGCAgcGUCAGAugguugccGAGGAAg- -3'
miRNA:   3'- -GUGCGCC-CGUuuCAGUUU--------CUCCUUgc -5'
19550 3' -50.9 NC_004685.1 + 7779 0.68 0.861159
Target:  5'- -cCGCGGGCGAaauAGUgCAGuGGGGuGCGg -3'
miRNA:   3'- guGCGCCCGUU---UCA-GUUuCUCCuUGC- -5'
19550 3' -50.9 NC_004685.1 + 13649 0.69 0.825983
Target:  5'- uGCGCuGGGCGugccCAGAGGGGAuuGCGa -3'
miRNA:   3'- gUGCG-CCCGUuucaGUUUCUCCU--UGC- -5'
19550 3' -50.9 NC_004685.1 + 32278 0.7 0.787456
Target:  5'- gGCGCGGGC--GGUCcuGGuGGcGCGg -3'
miRNA:   3'- gUGCGCCCGuuUCAGuuUCuCCuUGC- -5'
19550 3' -50.9 NC_004685.1 + 10559 0.7 0.777379
Target:  5'- aACGUGGGCGGgcuGGacguguUCAAGGAGuGGGCGa -3'
miRNA:   3'- gUGCGCCCGUU---UC------AGUUUCUC-CUUGC- -5'
19550 3' -50.9 NC_004685.1 + 15306 0.7 0.767149
Target:  5'- gACGCaGGCcGAGUgCuuGGAGGAGCu -3'
miRNA:   3'- gUGCGcCCGuUUCA-GuuUCUCCUUGc -5'
19550 3' -50.9 NC_004685.1 + 10191 0.72 0.692195
Target:  5'- gGC-CGGGuCGAGGUCAAcucGGAGGAcugGCGg -3'
miRNA:   3'- gUGcGCCC-GUUUCAGUU---UCUCCU---UGC- -5'
19550 3' -50.9 NC_004685.1 + 133 0.72 0.681154
Target:  5'- gGCGCGGGCGcggcugccgGGGUgGccGGGGAGCu -3'
miRNA:   3'- gUGCGCCCGU---------UUCAgUuuCUCCUUGc -5'
19550 3' -50.9 NC_004685.1 + 10094 0.73 0.636621
Target:  5'- gGCGCGGGUgcAGUCGAuGAGcGGCGa -3'
miRNA:   3'- gUGCGCCCGuuUCAGUUuCUCcUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.