miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19550 5' -60.9 NC_004685.1 + 60117 0.66 0.495701
Target:  5'- aCACGUCguuggGGAUCagGUCGCGCGC-CGUg -3'
miRNA:   3'- -GUGCAG-----UCUAGggCGGCGCGCGcGUA- -5'
19550 5' -60.9 NC_004685.1 + 529 0.66 0.485885
Target:  5'- gAgGUCGucgCCCGCCaGCaGCGCGCGg -3'
miRNA:   3'- gUgCAGUcuaGGGCGG-CG-CGCGCGUa -5'
19550 5' -60.9 NC_004685.1 + 63002 0.66 0.466539
Target:  5'- cCACG-CGGAagcugCCCGgCGUGgGCGCGg -3'
miRNA:   3'- -GUGCaGUCUa----GGGCgGCGCgCGCGUa -5'
19550 5' -60.9 NC_004685.1 + 1254 0.66 0.466539
Target:  5'- gAUGUCGGAUCCgGCUaCGCaGgGCAUc -3'
miRNA:   3'- gUGCAGUCUAGGgCGGcGCG-CgCGUA- -5'
19550 5' -60.9 NC_004685.1 + 24936 0.66 0.446662
Target:  5'- gGCGUCGGGUCCgaccaccagggcaCGCCG-GUGcCGCAc -3'
miRNA:   3'- gUGCAGUCUAGG-------------GCGGCgCGC-GCGUa -5'
19550 5' -60.9 NC_004685.1 + 11542 0.67 0.402199
Target:  5'- uGCGUCGGcgCUgCGCUGCGCuGgGCAUc -3'
miRNA:   3'- gUGCAGUCuaGG-GCGGCGCG-CgCGUA- -5'
19550 5' -60.9 NC_004685.1 + 14940 0.67 0.393476
Target:  5'- aGCGUCAaccuguccCCCGCCGUGgCGUGCGc -3'
miRNA:   3'- gUGCAGUcua-----GGGCGGCGC-GCGCGUa -5'
19550 5' -60.9 NC_004685.1 + 20084 0.67 0.39261
Target:  5'- -uCGUCGGccagCCCGCCuacgaggGCGCGCGgGUg -3'
miRNA:   3'- guGCAGUCua--GGGCGG-------CGCGCGCgUA- -5'
19550 5' -60.9 NC_004685.1 + 6734 0.67 0.384876
Target:  5'- uGCGUC-GAccccaaguacaUCCCGCCuGCGgUGCGCAg -3'
miRNA:   3'- gUGCAGuCU-----------AGGGCGG-CGC-GCGCGUa -5'
19550 5' -60.9 NC_004685.1 + 13816 0.68 0.351743
Target:  5'- gGCGUCAGcAUCCC-CCGCcaGUGCgGCAa -3'
miRNA:   3'- gUGCAGUC-UAGGGcGGCG--CGCG-CGUa -5'
19550 5' -60.9 NC_004685.1 + 32261 0.68 0.351743
Target:  5'- cCGCGUCGGccgCCgGUgGCGCGgGCGg -3'
miRNA:   3'- -GUGCAGUCua-GGgCGgCGCGCgCGUa -5'
19550 5' -60.9 NC_004685.1 + 1641 0.68 0.34142
Target:  5'- gCGCGUCuGcAUCCaugccugugccgugUGCUGCGCGCGUAUc -3'
miRNA:   3'- -GUGCAGuC-UAGG--------------GCGGCGCGCGCGUA- -5'
19550 5' -60.9 NC_004685.1 + 7031 0.69 0.313248
Target:  5'- gGC-UCGGucugCUCGCCGCGCuGCGCAa -3'
miRNA:   3'- gUGcAGUCua--GGGCGGCGCG-CGCGUa -5'
19550 5' -60.9 NC_004685.1 + 34468 0.69 0.305942
Target:  5'- gCACGUCuccAUCCgCaCCGUGCGCGCGa -3'
miRNA:   3'- -GUGCAGuc-UAGG-GcGGCGCGCGCGUa -5'
19550 5' -60.9 NC_004685.1 + 52447 0.69 0.298768
Target:  5'- uGCGuUCGGcgaacUCCCGCCaCGCGCGCu- -3'
miRNA:   3'- gUGC-AGUCu----AGGGCGGcGCGCGCGua -5'
19550 5' -60.9 NC_004685.1 + 68405 0.69 0.291725
Target:  5'- uGCGcccCGGGUCCgaugCGCCacGCGCGCGCGUa -3'
miRNA:   3'- gUGCa--GUCUAGG----GCGG--CGCGCGCGUA- -5'
19550 5' -60.9 NC_004685.1 + 59823 0.69 0.291725
Target:  5'- gGCGgugaaCAGGUCCUGCUcgGUGCGCGCc- -3'
miRNA:   3'- gUGCa----GUCUAGGGCGG--CGCGCGCGua -5'
19550 5' -60.9 NC_004685.1 + 32965 0.69 0.291725
Target:  5'- --gGUCuGAUCCCGCCGUG-GCaGCAg -3'
miRNA:   3'- gugCAGuCUAGGGCGGCGCgCG-CGUa -5'
19550 5' -60.9 NC_004685.1 + 31472 0.71 0.240022
Target:  5'- aGCGgcaAGGcguUCCCGCCGUGgGUGCAUg -3'
miRNA:   3'- gUGCag-UCU---AGGGCGGCGCgCGCGUA- -5'
19550 5' -60.9 NC_004685.1 + 35520 0.71 0.222698
Target:  5'- gAgGUCAGGUCgaccaCGCCGCGCuuGCGCGg -3'
miRNA:   3'- gUgCAGUCUAGg----GCGGCGCG--CGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.