miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19551 3' -60 NC_004685.1 + 25794 0.66 0.5298
Target:  5'- -gUGCuCGCCGggcagcggcgguGGGCCGGuCAGcGCCGCg -3'
miRNA:   3'- cgACG-GCGGU------------UCUGGCUcGUC-CGGUG- -5'
19551 3' -60 NC_004685.1 + 45205 0.66 0.5298
Target:  5'- cCUGUaCGCCGcGGCCGAGcCGGGUgauuCGCa -3'
miRNA:   3'- cGACG-GCGGUuCUGGCUC-GUCCG----GUG- -5'
19551 3' -60 NC_004685.1 + 45863 0.66 0.5298
Target:  5'- cGUUGCUGCCGGuGAUCGucaccgcgacGGUgaAGGCCAUc -3'
miRNA:   3'- -CGACGGCGGUU-CUGGC----------UCG--UCCGGUG- -5'
19551 3' -60 NC_004685.1 + 7049 0.66 0.5298
Target:  5'- cGCUGCgcaaCGCCAGGGCCGAcacGaCAG-CCGa -3'
miRNA:   3'- -CGACG----GCGGUUCUGGCU---C-GUCcGGUg -5'
19551 3' -60 NC_004685.1 + 30917 0.66 0.5298
Target:  5'- --cGCCGaCCGAGacgaacacguaGCC-AGCAGGUCGCc -3'
miRNA:   3'- cgaCGGC-GGUUC-----------UGGcUCGUCCGGUG- -5'
19551 3' -60 NC_004685.1 + 7348 0.66 0.5298
Target:  5'- --aGCCgGUCAacGGGCCGGGCAG-CUACu -3'
miRNA:   3'- cgaCGG-CGGU--UCUGGCUCGUCcGGUG- -5'
19551 3' -60 NC_004685.1 + 24964 0.66 0.528777
Target:  5'- cGgUGCCGCacacggugaugaaCAGcGGCCGGGUguccggcccgggGGGCCGCu -3'
miRNA:   3'- -CgACGGCG-------------GUU-CUGGCUCG------------UCCGGUG- -5'
19551 3' -60 NC_004685.1 + 31164 0.66 0.526734
Target:  5'- cGCUcGCCGCCGcgccgguccuGGGCgCGAugaagggcuaccagGCGGGCCu- -3'
miRNA:   3'- -CGA-CGGCGGU----------UCUG-GCU--------------CGUCCGGug -5'
19551 3' -60 NC_004685.1 + 12289 0.66 0.523674
Target:  5'- --aGCCGCCGcGACCGGGgAGaaugugaagaucauuGUCACg -3'
miRNA:   3'- cgaCGGCGGUuCUGGCUCgUC---------------CGGUG- -5'
19551 3' -60 NC_004685.1 + 67248 0.66 0.519604
Target:  5'- cGC-GCCGUCGaacAGGCCaccGGC-GGCCGCg -3'
miRNA:   3'- -CGaCGGCGGU---UCUGGc--UCGuCCGGUG- -5'
19551 3' -60 NC_004685.1 + 23003 0.66 0.519604
Target:  5'- --cGCCGCCGauAGGCCcGGUGGgauGCCACc -3'
miRNA:   3'- cgaCGGCGGU--UCUGGcUCGUC---CGGUG- -5'
19551 3' -60 NC_004685.1 + 62305 0.66 0.519604
Target:  5'- cGCuUGCCGUCGGGACCaucGUGGGCa-- -3'
miRNA:   3'- -CG-ACGGCGGUUCUGGcu-CGUCCGgug -5'
19551 3' -60 NC_004685.1 + 9884 0.66 0.519604
Target:  5'- --cGCCaucGCCAAGGCCGGGUAcgucCCGCa -3'
miRNA:   3'- cgaCGG---CGGUUCUGGCUCGUcc--GGUG- -5'
19551 3' -60 NC_004685.1 + 38721 0.66 0.519604
Target:  5'- cGCUGCCcugucgaugaGCCGAucGCCGcugaGGCGGGCgACc -3'
miRNA:   3'- -CGACGG----------CGGUUc-UGGC----UCGUCCGgUG- -5'
19551 3' -60 NC_004685.1 + 18816 0.66 0.519604
Target:  5'- cGCgcaaCCGCCGAcGGCUGcggcuguacaGGCAGGCgCGCa -3'
miRNA:   3'- -CGac--GGCGGUU-CUGGC----------UCGUCCG-GUG- -5'
19551 3' -60 NC_004685.1 + 9802 0.66 0.519604
Target:  5'- cGCgGCCGCCGcGG-CGAGguGGUCcCg -3'
miRNA:   3'- -CGaCGGCGGUuCUgGCUCguCCGGuG- -5'
19551 3' -60 NC_004685.1 + 48404 0.66 0.519604
Target:  5'- aGCUGuuGCUGGcaGuuGGGCGGuGCCGCg -3'
miRNA:   3'- -CGACggCGGUUc-UggCUCGUC-CGGUG- -5'
19551 3' -60 NC_004685.1 + 5513 0.66 0.509487
Target:  5'- --cGCCGCCGAGcgGCCGggguucuacgAGCuGGUCAUc -3'
miRNA:   3'- cgaCGGCGGUUC--UGGC----------UCGuCCGGUG- -5'
19551 3' -60 NC_004685.1 + 38095 0.66 0.499452
Target:  5'- aGCaGCUG-CAAGACCu-GCuGGGCCGCa -3'
miRNA:   3'- -CGaCGGCgGUUCUGGcuCG-UCCGGUG- -5'
19551 3' -60 NC_004685.1 + 38843 0.66 0.499452
Target:  5'- gGCUGCCgcGCCGgucGGugCccGCGGuGCCACc -3'
miRNA:   3'- -CGACGG--CGGU---UCugGcuCGUC-CGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.