miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19551 3' -60 NC_004685.1 + 2193 0.67 0.469901
Target:  5'- cGCgcaCCG-CGAGugCGAGCuGGCCGa -3'
miRNA:   3'- -CGac-GGCgGUUCugGCUCGuCCGGUg -5'
19551 3' -60 NC_004685.1 + 2350 0.71 0.265541
Target:  5'- --cGUCGCCGAGGuuGGGCaccccGGGCCAg -3'
miRNA:   3'- cgaCGGCGGUUCUggCUCG-----UCCGGUg -5'
19551 3' -60 NC_004685.1 + 2499 0.67 0.422738
Target:  5'- -gUGCUgGCC--GACCGGGCgcaaggAGGCCGCg -3'
miRNA:   3'- cgACGG-CGGuuCUGGCUCG------UCCGGUG- -5'
19551 3' -60 NC_004685.1 + 2888 0.69 0.353541
Target:  5'- gGC-GCUgGCCAGGAUCGGGCAcccGGCCcCa -3'
miRNA:   3'- -CGaCGG-CGGUUCUGGCUCGU---CCGGuG- -5'
19551 3' -60 NC_004685.1 + 3175 0.74 0.163408
Target:  5'- cGCUgugGCCGCCAAGGCgCGGG-AGGCgCGCc -3'
miRNA:   3'- -CGA---CGGCGGUUCUG-GCUCgUCCG-GUG- -5'
19551 3' -60 NC_004685.1 + 3342 0.68 0.378533
Target:  5'- cGCgUGUaCGCCuggauGACCGGGCGGGCgGg -3'
miRNA:   3'- -CG-ACG-GCGGuu---CUGGCUCGUCCGgUg -5'
19551 3' -60 NC_004685.1 + 5513 0.66 0.509487
Target:  5'- --cGCCGCCGAGcgGCCGggguucuacgAGCuGGUCAUc -3'
miRNA:   3'- cgaCGGCGGUUC--UGGC----------UCGuCCGGUG- -5'
19551 3' -60 NC_004685.1 + 6674 0.67 0.468931
Target:  5'- cGCUGCgcaagGCCGGGGCCaagGAGCccgagguGGGCgGCa -3'
miRNA:   3'- -CGACGg----CGGUUCUGG---CUCG-------UCCGgUG- -5'
19551 3' -60 NC_004685.1 + 6695 0.68 0.41365
Target:  5'- aGCUuCCGCgugggccuGACCGAGCAGGgCAa -3'
miRNA:   3'- -CGAcGGCGguu-----CUGGCUCGUCCgGUg -5'
19551 3' -60 NC_004685.1 + 7049 0.66 0.5298
Target:  5'- cGCUGCgcaaCGCCAGGGCCGAcacGaCAG-CCGa -3'
miRNA:   3'- -CGACG----GCGGUUCUGGCU---C-GUCcGGUg -5'
19551 3' -60 NC_004685.1 + 7348 0.66 0.5298
Target:  5'- --aGCCgGUCAacGGGCCGGGCAG-CUACu -3'
miRNA:   3'- cgaCGG-CGGU--UCUGGCUCGUCcGGUG- -5'
19551 3' -60 NC_004685.1 + 7943 0.67 0.469901
Target:  5'- -gUGaCGCU-GGACCGAGCcaAGGCCAUc -3'
miRNA:   3'- cgACgGCGGuUCUGGCUCG--UCCGGUG- -5'
19551 3' -60 NC_004685.1 + 8172 0.68 0.386258
Target:  5'- aUUGCCGCCGcgcacgAGGCCGGGUucgaggaGGGCUcCa -3'
miRNA:   3'- cGACGGCGGU------UCUGGCUCG-------UCCGGuG- -5'
19551 3' -60 NC_004685.1 + 8473 0.69 0.352729
Target:  5'- uGCgGCCgcgcugGCCGAGGCUGAGCgccggugGGGuCCGCu -3'
miRNA:   3'- -CGaCGG------CGGUUCUGGCUCG-------UCC-GGUG- -5'
19551 3' -60 NC_004685.1 + 8769 0.67 0.448808
Target:  5'- aGCUGCCGCCGucguGGCUugaGGGCuugaagcucacGCCGCg -3'
miRNA:   3'- -CGACGGCGGUu---CUGG---CUCGuc---------CGGUG- -5'
19551 3' -60 NC_004685.1 + 8807 0.78 0.078413
Target:  5'- cGC-GCCGCCGaccugcuGGGCCucgaugagGAGCAGGCCGCa -3'
miRNA:   3'- -CGaCGGCGGU-------UCUGG--------CUCGUCCGGUG- -5'
19551 3' -60 NC_004685.1 + 9258 0.66 0.479655
Target:  5'- aGCUGUgacccgcugggUGUCGGGAUgGAGCGGGgCAUg -3'
miRNA:   3'- -CGACG-----------GCGGUUCUGgCUCGUCCgGUG- -5'
19551 3' -60 NC_004685.1 + 9802 0.66 0.519604
Target:  5'- cGCgGCCGCCGcGG-CGAGguGGUCcCg -3'
miRNA:   3'- -CGaCGGCGGUuCUgGCUCguCCGGuG- -5'
19551 3' -60 NC_004685.1 + 9822 0.66 0.478675
Target:  5'- cGCUG-CGCCGGGuucuggaucaucaGCCGAGacgAGGCgCGCa -3'
miRNA:   3'- -CGACgGCGGUUC-------------UGGCUCg--UCCG-GUG- -5'
19551 3' -60 NC_004685.1 + 9884 0.66 0.519604
Target:  5'- --cGCCaucGCCAAGGCCGGGUAcgucCCGCa -3'
miRNA:   3'- cgaCGG---CGGUUCUGGCUCGUcc--GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.