miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19551 5' -57.5 NC_004685.1 + 54039 0.66 0.657052
Target:  5'- uGUGCGGggaugcCGCGggCGAUgGCucGCCGUCg -3'
miRNA:   3'- -UACGCCa-----GCGUgaGCUAgCG--CGGUAG- -5'
19551 5' -57.5 NC_004685.1 + 59826 0.66 0.646292
Target:  5'- gGUGaacaGGUCcUGCUCGGUgCGCGCC-UCg -3'
miRNA:   3'- -UACg---CCAGcGUGAGCUA-GCGCGGuAG- -5'
19551 5' -57.5 NC_004685.1 + 47079 0.66 0.646292
Target:  5'- -gGCGGUCGcCACcaUC-AUCGuCGCCGUg -3'
miRNA:   3'- uaCGCCAGC-GUG--AGcUAGC-GCGGUAg -5'
19551 5' -57.5 NC_004685.1 + 20229 0.66 0.646292
Target:  5'- cAUGaGGUCuuGCAUcugCGGucaUCGCGCCGUCg -3'
miRNA:   3'- -UACgCCAG--CGUGa--GCU---AGCGCGGUAG- -5'
19551 5' -57.5 NC_004685.1 + 25631 0.66 0.635521
Target:  5'- -cGCaGGUCGCGgUUGGUUGgCGUgGUCa -3'
miRNA:   3'- uaCG-CCAGCGUgAGCUAGC-GCGgUAG- -5'
19551 5' -57.5 NC_004685.1 + 28671 0.66 0.635521
Target:  5'- -cGCGGgCGU--UCGAUCGCGUCGg- -3'
miRNA:   3'- uaCGCCaGCGugAGCUAGCGCGGUag -5'
19551 5' -57.5 NC_004685.1 + 57848 0.66 0.624746
Target:  5'- -gGCGGUCGCGCccaccaacUCG-GCCAUCu -3'
miRNA:   3'- uaCGCCAGCGUGagcu----AGCgCGGUAG- -5'
19551 5' -57.5 NC_004685.1 + 7002 0.66 0.613978
Target:  5'- gAUGCGGcuaccCGCGCgaCGGUCGCGgCAa- -3'
miRNA:   3'- -UACGCCa----GCGUGa-GCUAGCGCgGUag -5'
19551 5' -57.5 NC_004685.1 + 29990 0.66 0.603224
Target:  5'- -cGCGGUCGaCGC-CGGUgGCGaCCugAUCg -3'
miRNA:   3'- uaCGCCAGC-GUGaGCUAgCGC-GG--UAG- -5'
19551 5' -57.5 NC_004685.1 + 62277 0.66 0.603224
Target:  5'- -cGCGG-CGCGCUgGccUGCGCCcUCg -3'
miRNA:   3'- uaCGCCaGCGUGAgCuaGCGCGGuAG- -5'
19551 5' -57.5 NC_004685.1 + 55052 0.67 0.580729
Target:  5'- -aGCGGUCGC-CgCGGUgGUuuccaucGCCAUCa -3'
miRNA:   3'- uaCGCCAGCGuGaGCUAgCG-------CGGUAG- -5'
19551 5' -57.5 NC_004685.1 + 3134 0.67 0.571139
Target:  5'- -gGCcGUCGuCGCUC-AUCGCGCCGa- -3'
miRNA:   3'- uaCGcCAGC-GUGAGcUAGCGCGGUag -5'
19551 5' -57.5 NC_004685.1 + 59385 0.67 0.571139
Target:  5'- gGUGuCGGgcaGCACgUCGAcCGCGCCGg- -3'
miRNA:   3'- -UAC-GCCag-CGUG-AGCUaGCGCGGUag -5'
19551 5' -57.5 NC_004685.1 + 29637 0.67 0.56053
Target:  5'- gAUGUGGccCGCG-UCGAUCuGCGCCAg- -3'
miRNA:   3'- -UACGCCa-GCGUgAGCUAG-CGCGGUag -5'
19551 5' -57.5 NC_004685.1 + 11976 0.67 0.56053
Target:  5'- -gGCGG-CGUGCUCGAagGCGCUc-- -3'
miRNA:   3'- uaCGCCaGCGUGAGCUagCGCGGuag -5'
19551 5' -57.5 NC_004685.1 + 35906 0.67 0.56053
Target:  5'- gGUGCGGUCGCugUCGccgacacCGCGacgacgcaccaCGUCu -3'
miRNA:   3'- -UACGCCAGCGugAGCua-----GCGCg----------GUAG- -5'
19551 5' -57.5 NC_004685.1 + 3175 0.67 0.559472
Target:  5'- --uCGGUCaGCGCcgccaugUCGAUgGUGCCGUCg -3'
miRNA:   3'- uacGCCAG-CGUG-------AGCUAgCGCGGUAG- -5'
19551 5' -57.5 NC_004685.1 + 16549 0.67 0.549975
Target:  5'- -cGCGGUgauggcgGCGCUCGAccgcugggCGCuGCCGUCg -3'
miRNA:   3'- uaCGCCAg------CGUGAGCUa-------GCG-CGGUAG- -5'
19551 5' -57.5 NC_004685.1 + 55172 0.68 0.539483
Target:  5'- -cGCGG-CGCGCgUCGG-CGCGUCAa- -3'
miRNA:   3'- uaCGCCaGCGUG-AGCUaGCGCGGUag -5'
19551 5' -57.5 NC_004685.1 + 2404 0.68 0.529059
Target:  5'- -cGCGGUCGUuCUCGca-GUGCCAg- -3'
miRNA:   3'- uaCGCCAGCGuGAGCuagCGCGGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.