miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19552 3' -50.7 NC_004685.1 + 13955 0.66 0.960211
Target:  5'- --cGGCGUCaUCGUGccgauaccgcggugcGCGGCGaGGACg -3'
miRNA:   3'- gaaCCGCAG-AGCACu--------------UGCUGCaCUUG- -5'
19552 3' -50.7 NC_004685.1 + 41727 0.66 0.959822
Target:  5'- -gUGGCG----GUGGGCGGCGUGAc- -3'
miRNA:   3'- gaACCGCagagCACUUGCUGCACUug -5'
19552 3' -50.7 NC_004685.1 + 20177 0.66 0.955789
Target:  5'- ---cGCGUCUCGacgaguuccUGAACGACcccauccugcaGUGGGCg -3'
miRNA:   3'- gaacCGCAGAGC---------ACUUGCUG-----------CACUUG- -5'
19552 3' -50.7 NC_004685.1 + 51897 0.67 0.931542
Target:  5'- --aGGCGuugcUCUCGUGAACGuc--GAGCa -3'
miRNA:   3'- gaaCCGC----AGAGCACUUGCugcaCUUG- -5'
19552 3' -50.7 NC_004685.1 + 49215 0.67 0.931542
Target:  5'- -cUGGCGUCcgCGUGGccaacGCGGCc-GAACg -3'
miRNA:   3'- gaACCGCAGa-GCACU-----UGCUGcaCUUG- -5'
19552 3' -50.7 NC_004685.1 + 50288 0.67 0.919274
Target:  5'- gCUUGGCccGUCgUCGUGAucgaccaGCGACGgaUGggUg -3'
miRNA:   3'- -GAACCG--CAG-AGCACU-------UGCUGC--ACuuG- -5'
19552 3' -50.7 NC_004685.1 + 11863 0.68 0.89322
Target:  5'- --cGGUGagaUCGUcgccGACGACGUGAACa -3'
miRNA:   3'- gaaCCGCag-AGCAc---UUGCUGCACUUG- -5'
19552 3' -50.7 NC_004685.1 + 9400 0.68 0.89322
Target:  5'- -aUGGCGUCgcCGUGGGCGGUGUucGCu -3'
miRNA:   3'- gaACCGCAGa-GCACUUGCUGCAcuUG- -5'
19552 3' -50.7 NC_004685.1 + 47973 0.69 0.845278
Target:  5'- -aUGGCGUcCUCGUuGACGACG--AGCg -3'
miRNA:   3'- gaACCGCA-GAGCAcUUGCUGCacUUG- -5'
19552 3' -50.7 NC_004685.1 + 41149 0.69 0.845278
Target:  5'- -gUGGCGUCUCcUGGAcCGGCGacAACa -3'
miRNA:   3'- gaACCGCAGAGcACUU-GCUGCacUUG- -5'
19552 3' -50.7 NC_004685.1 + 3809 0.7 0.818125
Target:  5'- -cUGGCucgcaUCUCGUcGGGCGACG-GGACg -3'
miRNA:   3'- gaACCGc----AGAGCA-CUUGCUGCaCUUG- -5'
19552 3' -50.7 NC_004685.1 + 45139 0.7 0.808662
Target:  5'- --gGGCGUCUCGUcGACGGgGaugcgGGACa -3'
miRNA:   3'- gaaCCGCAGAGCAcUUGCUgCa----CUUG- -5'
19552 3' -50.7 NC_004685.1 + 1925 0.71 0.779184
Target:  5'- gUUGGCGUCagCGgcGACGGgCGUGGGCa -3'
miRNA:   3'- gAACCGCAGa-GCacUUGCU-GCACUUG- -5'
19552 3' -50.7 NC_004685.1 + 69068 1.11 0.003082
Target:  5'- gCUUGGCGUCUCGUGAACGACGUGAACa -3'
miRNA:   3'- -GAACCGCAGAGCACUUGCUGCACUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.