miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19554 3' -57.2 NC_004686.1 + 25074 0.66 0.628459
Target:  5'- cGGGCGacaCGGGUuucGAGGUccgGCACGGGCGg- -3'
miRNA:   3'- -CUUGC---GCCUA---CUCCG---CGUGCUCGCag -5'
19554 3' -57.2 NC_004686.1 + 21900 0.66 0.606695
Target:  5'- -cGCGCcGccGAGGCGCACccgcaaguGCGUCg -3'
miRNA:   3'- cuUGCGcCuaCUCCGCGUGcu------CGCAG- -5'
19554 3' -57.2 NC_004686.1 + 7325 0.66 0.59584
Target:  5'- cAAUGCGGAUGccGGUgaGCACacccgGGGCGUCc -3'
miRNA:   3'- cUUGCGCCUACu-CCG--CGUG-----CUCGCAG- -5'
19554 3' -57.2 NC_004686.1 + 5408 0.66 0.57423
Target:  5'- cGGGCGUGGcUGAGGUGC-CG-GUGgUCa -3'
miRNA:   3'- -CUUGCGCCuACUCCGCGuGCuCGC-AG- -5'
19554 3' -57.2 NC_004686.1 + 21822 0.66 0.574229
Target:  5'- --uUGCGGGUGcgccucGGCgGCGCGGGCG-Cg -3'
miRNA:   3'- cuuGCGCCUACu-----CCG-CGUGCUCGCaG- -5'
19554 3' -57.2 NC_004686.1 + 19047 0.67 0.56349
Target:  5'- ---gGCGGGUcGGGUGCugGccggcaGGCGUCu -3'
miRNA:   3'- cuugCGCCUAcUCCGCGugC------UCGCAG- -5'
19554 3' -57.2 NC_004686.1 + 47792 0.67 0.56349
Target:  5'- gGGAUGCGGAguuGGCGgcUACGGGCGc- -3'
miRNA:   3'- -CUUGCGCCUacuCCGC--GUGCUCGCag -5'
19554 3' -57.2 NC_004686.1 + 26506 0.67 0.56349
Target:  5'- cAGCGCaGGUGucGCGCAUGGagaugaucuguGCGUCg -3'
miRNA:   3'- cUUGCGcCUACucCGCGUGCU-----------CGCAG- -5'
19554 3' -57.2 NC_004686.1 + 56180 0.67 0.55174
Target:  5'- -cGCGUuuggucuGGucaGAGGUGCACG-GCGUCg -3'
miRNA:   3'- cuUGCG-------CCua-CUCCGCGUGCuCGCAG- -5'
19554 3' -57.2 NC_004686.1 + 26545 0.67 0.521147
Target:  5'- uGACGCGGGUGgcAGGCaGUuccaguuucagaGCGAGCG-Ca -3'
miRNA:   3'- cUUGCGCCUAC--UCCG-CG------------UGCUCGCaG- -5'
19554 3' -57.2 NC_004686.1 + 11771 0.67 0.518018
Target:  5'- aGAACGCGGGcagcgccggauccaUGuauGGgGCugGGGCGa- -3'
miRNA:   3'- -CUUGCGCCU--------------ACu--CCgCGugCUCGCag -5'
19554 3' -57.2 NC_004686.1 + 55050 0.68 0.480099
Target:  5'- uGGCGCGGuUGuAGGCGgCGCugcgguugaacuGGGCGUCu -3'
miRNA:   3'- cUUGCGCCuAC-UCCGC-GUG------------CUCGCAG- -5'
19554 3' -57.2 NC_004686.1 + 52687 0.69 0.440695
Target:  5'- --uCGCGGgcGAGGCGaACGuuguggagGGCGUCg -3'
miRNA:   3'- cuuGCGCCuaCUCCGCgUGC--------UCGCAG- -5'
19554 3' -57.2 NC_004686.1 + 45864 0.69 0.440695
Target:  5'- ---gGCGGAUGAaGUGUugG-GCGUCg -3'
miRNA:   3'- cuugCGCCUACUcCGCGugCuCGCAG- -5'
19554 3' -57.2 NC_004686.1 + 17340 0.69 0.430183
Target:  5'- aGGAUGCGcuaGGGGCGCugGccaacugGGCGUCa -3'
miRNA:   3'- -CUUGCGCcuaCUCCGCGugC-------UCGCAG- -5'
19554 3' -57.2 NC_004686.1 + 30559 0.69 0.40961
Target:  5'- cGAuCGCGGGUGAGGCauuCACGGccggugcgcaguauGCGUUg -3'
miRNA:   3'- -CUuGCGCCUACUCCGc--GUGCU--------------CGCAG- -5'
19554 3' -57.2 NC_004686.1 + 48133 0.7 0.367776
Target:  5'- cGAGCGCGGAUGAuccGCGUguccuggagGCG-GUGUCg -3'
miRNA:   3'- -CUUGCGCCUACUc--CGCG---------UGCuCGCAG- -5'
19554 3' -57.2 NC_004686.1 + 55870 0.7 0.350888
Target:  5'- cGAUGCGGuguUGguAGGCGUAgGGGCGUUg -3'
miRNA:   3'- cUUGCGCCu--AC--UCCGCGUgCUCGCAG- -5'
19554 3' -57.2 NC_004686.1 + 28759 0.7 0.350887
Target:  5'- gGGGCGCGG-UGAuGCGCggguuuuaugcgGCGGGUGUCg -3'
miRNA:   3'- -CUUGCGCCuACUcCGCG------------UGCUCGCAG- -5'
19554 3' -57.2 NC_004686.1 + 37035 0.72 0.268036
Target:  5'- gGGugGCuGGGUGGauccgugguuGGCGCGCcugGAGCGUCa -3'
miRNA:   3'- -CUugCG-CCUACU----------CCGCGUG---CUCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.