miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19556 3' -54 NC_004686.1 + 42604 0.66 0.793475
Target:  5'- --cGGCGGG-GCUugUCUUCGCCGGgGa -3'
miRNA:   3'- aacUUGCCUgCGA--AGAAGUGGCCgCg -5'
19556 3' -54 NC_004686.1 + 5916 0.66 0.773409
Target:  5'- cUGGcCGGugGCUaUCggCuGCCGGCGa -3'
miRNA:   3'- aACUuGCCugCGA-AGaaG-UGGCCGCg -5'
19556 3' -54 NC_004686.1 + 28119 0.67 0.742219
Target:  5'- aUGccGACGGACGCcaacaccgCUUCAgCGGCuGUg -3'
miRNA:   3'- aAC--UUGCCUGCGaa------GAAGUgGCCG-CG- -5'
19556 3' -54 NC_004686.1 + 24285 0.67 0.731578
Target:  5'- --aGACGGugGCUg---UugCGGUGCg -3'
miRNA:   3'- aacUUGCCugCGAagaaGugGCCGCG- -5'
19556 3' -54 NC_004686.1 + 48772 0.67 0.730508
Target:  5'- cUGAACGGcCGCUggccccgUCUUCG-CGGUGa -3'
miRNA:   3'- aACUUGCCuGCGA-------AGAAGUgGCCGCg -5'
19556 3' -54 NC_004686.1 + 42810 0.67 0.720835
Target:  5'- --aGGCGGACGCcUCaugagUCGCCGGUuCa -3'
miRNA:   3'- aacUUGCCUGCGaAGa----AGUGGCCGcG- -5'
19556 3' -54 NC_004686.1 + 3375 0.67 0.710002
Target:  5'- -cGAAUGaACGcCUUCcgcagCGCCGGCGUg -3'
miRNA:   3'- aaCUUGCcUGC-GAAGaa---GUGGCCGCG- -5'
19556 3' -54 NC_004686.1 + 5703 0.67 0.699091
Target:  5'- --cAACGGaACGCggagaagUCACCGGCGa -3'
miRNA:   3'- aacUUGCC-UGCGaaga---AGUGGCCGCg -5'
19556 3' -54 NC_004686.1 + 46593 0.68 0.666002
Target:  5'- ---cGCGGGCGaa--UUCAUCGGCGUa -3'
miRNA:   3'- aacuUGCCUGCgaagAAGUGGCCGCG- -5'
19556 3' -54 NC_004686.1 + 27966 0.68 0.666002
Target:  5'- -gGugUGGACGCUccaguUCguguaggUGCCGGCGCa -3'
miRNA:   3'- aaCuuGCCUGCGA-----AGaa-----GUGGCCGCG- -5'
19556 3' -54 NC_004686.1 + 42178 0.68 0.63262
Target:  5'- -cGAugGcACGCUgggCUUCAUccuuggCGGCGCg -3'
miRNA:   3'- aaCUugCcUGCGAa--GAAGUG------GCCGCG- -5'
19556 3' -54 NC_004686.1 + 5376 0.68 0.63262
Target:  5'- -cGAuguUGGugGUgucgaggaUCUUCGCCGGCGa -3'
miRNA:   3'- aaCUu--GCCugCGa-------AGAAGUGGCCGCg -5'
19556 3' -54 NC_004686.1 + 17518 0.69 0.599232
Target:  5'- gUUGAuCGGGcCGCggUCgUUGCUGGCGCa -3'
miRNA:   3'- -AACUuGCCU-GCGa-AGaAGUGGCCGCG- -5'
19556 3' -54 NC_004686.1 + 3268 0.69 0.588147
Target:  5'- cUGAaggcGCGGugGaugaUUUcaCGCCGGCGCu -3'
miRNA:   3'- aACU----UGCCugCg---AAGaaGUGGCCGCG- -5'
19556 3' -54 NC_004686.1 + 39051 0.69 0.577101
Target:  5'- gUGAACcuGGC-CggCUUCACCGGUGCc -3'
miRNA:   3'- aACUUGc-CUGcGaaGAAGUGGCCGCG- -5'
19556 3' -54 NC_004686.1 + 5501 0.71 0.501515
Target:  5'- -cGGACGu-CGCUUcCUUCGCCGGCc- -3'
miRNA:   3'- aaCUUGCcuGCGAA-GAAGUGGCCGcg -5'
19556 3' -54 NC_004686.1 + 32247 0.71 0.480691
Target:  5'- gUGGAUGauGGCGU-UCcUCACCGGCGCc -3'
miRNA:   3'- aACUUGC--CUGCGaAGaAGUGGCCGCG- -5'
19556 3' -54 NC_004686.1 + 47802 0.71 0.460298
Target:  5'- gUUGGcggcuACGGGCGCUUUggCGCgGGgGCg -3'
miRNA:   3'- -AACU-----UGCCUGCGAAGaaGUGgCCgCG- -5'
19556 3' -54 NC_004686.1 + 12136 0.72 0.440372
Target:  5'- --cGGCGGGCaGUUUCggCGCCGGCGg -3'
miRNA:   3'- aacUUGCCUG-CGAAGaaGUGGCCGCg -5'
19556 3' -54 NC_004686.1 + 4827 0.74 0.34031
Target:  5'- -cGcGCGGAC-CUUCUUCAgCGGCGg -3'
miRNA:   3'- aaCuUGCCUGcGAAGAAGUgGCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.