miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19556 5' -51.3 NC_004686.1 + 24596 0.66 0.915155
Target:  5'- ---aGCCGGCGgggccgcgggaUUGAACGUggaucUUCAUGa -3'
miRNA:   3'- agugCGGCCGCa----------AACUUGCG-----AAGUAC- -5'
19556 5' -51.3 NC_004686.1 + 3357 0.66 0.908572
Target:  5'- -aGCGCCGGCGU--GAaaucauccaccGCGcCUUCAg- -3'
miRNA:   3'- agUGCGGCCGCAaaCU-----------UGC-GAAGUac -5'
19556 5' -51.3 NC_004686.1 + 30542 0.66 0.908572
Target:  5'- uUCACgGCCGGUGcgcaguaugcgUUGGAuCGCaUCGUGg -3'
miRNA:   3'- -AGUG-CGGCCGCa----------AACUU-GCGaAGUAC- -5'
19556 5' -51.3 NC_004686.1 + 866 0.66 0.901701
Target:  5'- gCACGCUGGCGUgugaugUGAugGgU--GUGa -3'
miRNA:   3'- aGUGCGGCCGCAa-----ACUugCgAagUAC- -5'
19556 5' -51.3 NC_004686.1 + 13886 0.66 0.901701
Target:  5'- gUCGCGCagcaucugcucuUGGCGUUUcuGCGCgagCGUGg -3'
miRNA:   3'- -AGUGCG------------GCCGCAAAcuUGCGaa-GUAC- -5'
19556 5' -51.3 NC_004686.1 + 1345 0.66 0.894546
Target:  5'- -aACGCCGGCGUgauAAgGCUUUg-- -3'
miRNA:   3'- agUGCGGCCGCAaacUUgCGAAGuac -5'
19556 5' -51.3 NC_004686.1 + 48020 0.66 0.894546
Target:  5'- gUCGCGCCGGCGagccaaccGAAC-CUUCc-- -3'
miRNA:   3'- -AGUGCGGCCGCaaa-----CUUGcGAAGuac -5'
19556 5' -51.3 NC_004686.1 + 36962 0.66 0.88711
Target:  5'- --gUGCCGGCGUgaaucuugUUGAGCGUUUgAa- -3'
miRNA:   3'- aguGCGGCCGCA--------AACUUGCGAAgUac -5'
19556 5' -51.3 NC_004686.1 + 20103 0.66 0.88711
Target:  5'- aCACGgCGGUGgccgUGAACgGUUUCGUc -3'
miRNA:   3'- aGUGCgGCCGCaa--ACUUG-CGAAGUAc -5'
19556 5' -51.3 NC_004686.1 + 2008 0.66 0.884826
Target:  5'- gUCGCGCCGGCaggaucguacuucgGgaggUUGGAUGCUU-GUGc -3'
miRNA:   3'- -AGUGCGGCCG--------------Ca---AACUUGCGAAgUAC- -5'
19556 5' -51.3 NC_004686.1 + 12067 0.67 0.8794
Target:  5'- -gGCGCCGGCGg--GAAUGUaucccucagUUCGUc -3'
miRNA:   3'- agUGCGGCCGCaaaCUUGCG---------AAGUAc -5'
19556 5' -51.3 NC_004686.1 + 32173 0.68 0.82775
Target:  5'- aCGCGUCGGCGaUUGAua-UUUCGUGg -3'
miRNA:   3'- aGUGCGGCCGCaAACUugcGAAGUAC- -5'
19556 5' -51.3 NC_004686.1 + 33405 0.68 0.808693
Target:  5'- -aACGCCGGUGUUgcUGugUGUUUCGUc -3'
miRNA:   3'- agUGCGGCCGCAA--ACuuGCGAAGUAc -5'
19556 5' -51.3 NC_004686.1 + 27276 0.69 0.778668
Target:  5'- cCACGCCGGUGUgguucUUGAACGg--CAa- -3'
miRNA:   3'- aGUGCGGCCGCA-----AACUUGCgaaGUac -5'
19556 5' -51.3 NC_004686.1 + 32164 0.69 0.768324
Target:  5'- -gGCGCCGGUGag-GAACGCcaUCAUc -3'
miRNA:   3'- agUGCGGCCGCaaaCUUGCGa-AGUAc -5'
19556 5' -51.3 NC_004686.1 + 33760 0.73 0.557452
Target:  5'- cCACGCCGGCGg--GAGCaCcgCAUGa -3'
miRNA:   3'- aGUGCGGCCGCaaaCUUGcGaaGUAC- -5'
19556 5' -51.3 NC_004686.1 + 9233 0.74 0.477568
Target:  5'- cUCACgGCCGGCGgcuugucagagGGACGCUUC-UGa -3'
miRNA:   3'- -AGUG-CGGCCGCaaa--------CUUGCGAAGuAC- -5'
19556 5' -51.3 NC_004686.1 + 3288 0.75 0.440776
Target:  5'- uUCACGCCGGCGcugcgGAAgGCgUUCAUu -3'
miRNA:   3'- -AGUGCGGCCGCaaa--CUUgCG-AAGUAc -5'
19556 5' -51.3 NC_004686.1 + 95 0.76 0.383231
Target:  5'- --uCGCCGGCGUgacggGGACGCUcCGUGu -3'
miRNA:   3'- aguGCGGCCGCAaa---CUUGCGAaGUAC- -5'
19556 5' -51.3 NC_004686.1 + 1413 1.1 0.002151
Target:  5'- aUCACGCCGGCGUUUGAACGCUUCAUGa -3'
miRNA:   3'- -AGUGCGGCCGCAAACUUGCGAAGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.