miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19558 5' -55.7 NC_004686.1 + 32782 0.66 0.668795
Target:  5'- gGCAUCUGgGUCGGCAgCAUCGaauugGGAUAc -3'
miRNA:   3'- -UGUGGACgCGGCCGU-GUGGCa----UUUGU- -5'
19558 5' -55.7 NC_004686.1 + 39048 0.66 0.668795
Target:  5'- -aACCUG-GCCGGCuuCACCGgu-GCc -3'
miRNA:   3'- ugUGGACgCGGCCGu-GUGGCauuUGu -5'
19558 5' -55.7 NC_004686.1 + 7173 0.66 0.657796
Target:  5'- uGCACCc-UGCCGGCucgACACCGcAAACc -3'
miRNA:   3'- -UGUGGacGCGGCCG---UGUGGCaUUUGu -5'
19558 5' -55.7 NC_004686.1 + 16855 0.66 0.646773
Target:  5'- aACACCaccaguguUGCGuuGGCG-GCCGgcAACAc -3'
miRNA:   3'- -UGUGG--------ACGCggCCGUgUGGCauUUGU- -5'
19558 5' -55.7 NC_004686.1 + 8973 0.66 0.646773
Target:  5'- cGCgACCUGaCGCCuGGCuccCACCGaacggGGACAg -3'
miRNA:   3'- -UG-UGGAC-GCGG-CCGu--GUGGCa----UUUGU- -5'
19558 5' -55.7 NC_004686.1 + 6307 0.67 0.632425
Target:  5'- cCGCC-GCGCUGGCGCGuaucgaaagugaccCCGUAGGg- -3'
miRNA:   3'- uGUGGaCGCGGCCGUGU--------------GGCAUUUgu -5'
19558 5' -55.7 NC_004686.1 + 26264 0.67 0.602648
Target:  5'- gGCugUcggggUGUGCUGGCACGCCGgccagGGAUc -3'
miRNA:   3'- -UGugG-----ACGCGGCCGUGUGGCa----UUUGu -5'
19558 5' -55.7 NC_004686.1 + 10945 0.67 0.591656
Target:  5'- aAUGCUUGUGCCGGC-CGgCGcGGACGg -3'
miRNA:   3'- -UGUGGACGCGGCCGuGUgGCaUUUGU- -5'
19558 5' -55.7 NC_004686.1 + 24762 0.68 0.569785
Target:  5'- uACGCCUGC-CagacaGGUGCACUGUGAaacGCAu -3'
miRNA:   3'- -UGUGGACGcGg----CCGUGUGGCAUU---UGU- -5'
19558 5' -55.7 NC_004686.1 + 14825 0.68 0.53738
Target:  5'- cCACCU--GCCGGUACACCGcguACGg -3'
miRNA:   3'- uGUGGAcgCGGCCGUGUGGCauuUGU- -5'
19558 5' -55.7 NC_004686.1 + 26439 0.68 0.526716
Target:  5'- gACACCUGCGCUGcGCuCGCUcugAAACu -3'
miRNA:   3'- -UGUGGACGCGGC-CGuGUGGca-UUUGu -5'
19558 5' -55.7 NC_004686.1 + 21906 0.68 0.526716
Target:  5'- cGCGCCcGCGCCgccgaGGCGCACCc---GCAa -3'
miRNA:   3'- -UGUGGaCGCGG-----CCGUGUGGcauuUGU- -5'
19558 5' -55.7 NC_004686.1 + 23590 0.69 0.516132
Target:  5'- cCACCUGgGCUGGUGuCACCgGUGAAg- -3'
miRNA:   3'- uGUGGACgCGGCCGU-GUGG-CAUUUgu -5'
19558 5' -55.7 NC_004686.1 + 33765 0.69 0.516132
Target:  5'- uACGCCcaCGCCGGCgggaGCACCGcaugAAGCGg -3'
miRNA:   3'- -UGUGGacGCGGCCG----UGUGGCa---UUUGU- -5'
19558 5' -55.7 NC_004686.1 + 56069 0.69 0.505635
Target:  5'- gGCACCcGCGaCCGGUggacccgcgACGCCGU--GCAc -3'
miRNA:   3'- -UGUGGaCGC-GGCCG---------UGUGGCAuuUGU- -5'
19558 5' -55.7 NC_004686.1 + 12223 0.69 0.495231
Target:  5'- -gGCCUGacCGCCGGCGCcgaaacugcccGCCGUugcGGCAg -3'
miRNA:   3'- ugUGGAC--GCGGCCGUG-----------UGGCAu--UUGU- -5'
19558 5' -55.7 NC_004686.1 + 33491 0.7 0.454646
Target:  5'- -uGgCUGCGCUGGCAgGCCG--AGCAc -3'
miRNA:   3'- ugUgGACGCGGCCGUgUGGCauUUGU- -5'
19558 5' -55.7 NC_004686.1 + 17533 0.7 0.454646
Target:  5'- cACACCUcGCGCgGcuGCACACCGUcAGAgAa -3'
miRNA:   3'- -UGUGGA-CGCGgC--CGUGUGGCA-UUUgU- -5'
19558 5' -55.7 NC_004686.1 + 29875 0.7 0.444782
Target:  5'- gUACCUGCGCC---GCACCGUGuACGg -3'
miRNA:   3'- uGUGGACGCGGccgUGUGGCAUuUGU- -5'
19558 5' -55.7 NC_004686.1 + 2828 0.7 0.415931
Target:  5'- -aGCCUGCGCCGaaGCGuCCGUucGGGCAg -3'
miRNA:   3'- ugUGGACGCGGCcgUGU-GGCA--UUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.