miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19559 5' -61.5 NC_004686.1 + 11984 0.66 0.426683
Target:  5'- cGGCaCC--GA-CCGGCCCAGGa-GGCa -3'
miRNA:   3'- uCUG-GGaaCUaGGCCGGGUCCgcCCG- -5'
19559 5' -61.5 NC_004686.1 + 25816 0.66 0.426683
Target:  5'- uGGCUg-UGcgCCGGCCCGcGGcCGGGa -3'
miRNA:   3'- uCUGGgaACuaGGCCGGGU-CC-GCCCg -5'
19559 5' -61.5 NC_004686.1 + 3191 0.66 0.408614
Target:  5'- cAGACCaaUGcgcAUCCgGGCUCGcGGCGGGg -3'
miRNA:   3'- -UCUGGgaAC---UAGG-CCGGGU-CCGCCCg -5'
19559 5' -61.5 NC_004686.1 + 37743 0.66 0.407723
Target:  5'- --uCCCagGAUCCGGCcaguguccccauaCCAGGCGGu- -3'
miRNA:   3'- ucuGGGaaCUAGGCCG-------------GGUCCGCCcg -5'
19559 5' -61.5 NC_004686.1 + 19031 0.66 0.39976
Target:  5'- uGACCU---GUUCGGUgUGGGCGGGUc -3'
miRNA:   3'- uCUGGGaacUAGGCCGgGUCCGCCCG- -5'
19559 5' -61.5 NC_004686.1 + 30222 0.66 0.39103
Target:  5'- uGACCCUUGAcgUGGCCaauGGUcgauGGGUg -3'
miRNA:   3'- uCUGGGAACUagGCCGGgu-CCG----CCCG- -5'
19559 5' -61.5 NC_004686.1 + 23932 0.67 0.34133
Target:  5'- -aACCCUUGAcgCGGCCgacaAGGCaucGGGCu -3'
miRNA:   3'- ucUGGGAACUagGCCGGg---UCCG---CCCG- -5'
19559 5' -61.5 NC_004686.1 + 3835 0.68 0.318248
Target:  5'- gGGGCCUacGcgCUGG-CCGGGUGGGUg -3'
miRNA:   3'- -UCUGGGaaCuaGGCCgGGUCCGCCCG- -5'
19559 5' -61.5 NC_004686.1 + 25910 0.69 0.262512
Target:  5'- -aACCgUUGAUCUGuCCCGGccGCGGGCc -3'
miRNA:   3'- ucUGGgAACUAGGCcGGGUC--CGCCCG- -5'
19559 5' -61.5 NC_004686.1 + 26446 0.7 0.220489
Target:  5'- -aGCCCUUGggCaGGUCgGGGCGGGg -3'
miRNA:   3'- ucUGGGAACuaGgCCGGgUCCGCCCg -5'
19559 5' -61.5 NC_004686.1 + 25064 0.7 0.220489
Target:  5'- gGGuuUCgaGGUCCGGCaCGGGCGGGUu -3'
miRNA:   3'- -UCugGGaaCUAGGCCGgGUCCGCCCG- -5'
19559 5' -61.5 NC_004686.1 + 43676 0.71 0.189163
Target:  5'- uAGACCCgUUGAUCC-GCCCAucauuGCGGcGCu -3'
miRNA:   3'- -UCUGGG-AACUAGGcCGGGUc----CGCC-CG- -5'
19559 5' -61.5 NC_004686.1 + 39708 0.71 0.189163
Target:  5'- cGACCCcaucccUGAacaugUCCuGGCCCAGGCGGcccGCc -3'
miRNA:   3'- uCUGGGa-----ACU-----AGG-CCGGGUCCGCC---CG- -5'
19559 5' -61.5 NC_004686.1 + 11380 0.72 0.170513
Target:  5'- cAGGCCCUucUGGUgggguuguuuccUCGGUUCGGGuCGGGCg -3'
miRNA:   3'- -UCUGGGA--ACUA------------GGCCGGGUCC-GCCCG- -5'
19559 5' -61.5 NC_004686.1 + 3103 1.1 0.000202
Target:  5'- gAGACCCUUGAUCCGGCCCAGGCGGGCu -3'
miRNA:   3'- -UCUGGGAACUAGGCCGGGUCCGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.