miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19560 3' -49.8 NC_004686.1 + 703 0.76 0.462042
Target:  5'- cCGUCGGAGC-CGAcuccgacucagguuUGAGCGCCUUCa -3'
miRNA:   3'- aGCGGUUUCGuGCUu-------------ACUUGCGGAAG- -5'
19560 3' -49.8 NC_004686.1 + 1426 0.72 0.68167
Target:  5'- gCGCCAAAGCcuuaucacgccgGCGuuUGAACG-CUUCa -3'
miRNA:   3'- aGCGGUUUCG------------UGCuuACUUGCgGAAG- -5'
19560 3' -49.8 NC_004686.1 + 3258 0.66 0.929746
Target:  5'- aUCGCUgaggcugAAGGCGCGGuggAUGAuuucACGCCggCg -3'
miRNA:   3'- -AGCGG-------UUUCGUGCU---UACU----UGCGGaaG- -5'
19560 3' -49.8 NC_004686.1 + 3386 0.96 0.025646
Target:  5'- aUCG-CAAAGCACGAAUGAACGCCUUCc -3'
miRNA:   3'- -AGCgGUUUCGUGCUUACUUGCGGAAG- -5'
19560 3' -49.8 NC_004686.1 + 4268 0.68 0.874331
Target:  5'- aUUGCCGcacgcGGGCACGAucuuccggcGUGGACGgCUUa -3'
miRNA:   3'- -AGCGGU-----UUCGUGCU---------UACUUGCgGAAg -5'
19560 3' -49.8 NC_004686.1 + 4583 0.68 0.874331
Target:  5'- cCGCCAAAGCG-GAAgcguuGCGgCUUCg -3'
miRNA:   3'- aGCGGUUUCGUgCUUacu--UGCgGAAG- -5'
19560 3' -49.8 NC_004686.1 + 9448 0.72 0.658783
Target:  5'- cCGCCAAGGCugGugcaGACGCCg-- -3'
miRNA:   3'- aGCGGUUUCGugCuuacUUGCGGaag -5'
19560 3' -49.8 NC_004686.1 + 11092 0.74 0.57729
Target:  5'- cCGCCGuGAGCACGAcccccaccgaaacGUGGACGCUUcCa -3'
miRNA:   3'- aGCGGU-UUCGUGCU-------------UACUUGCGGAaG- -5'
19560 3' -49.8 NC_004686.1 + 17348 0.73 0.635789
Target:  5'- aUCGCCGugaucaccGCACGggUGAacucgACGCCcUCc -3'
miRNA:   3'- -AGCGGUuu------CGUGCuuACU-----UGCGGaAG- -5'
19560 3' -49.8 NC_004686.1 + 17802 0.67 0.923757
Target:  5'- gCGCCAc--CGCGAucacaucuucgcuGUGGAuCGCCUUCu -3'
miRNA:   3'- aGCGGUuucGUGCU-------------UACUU-GCGGAAG- -5'
19560 3' -49.8 NC_004686.1 + 18579 0.66 0.951154
Target:  5'- aUCGgcuCCGAcuuggcGGCACGAuagGUGAugGCCa-- -3'
miRNA:   3'- -AGC---GGUU------UCGUGCU---UACUugCGGaag -5'
19560 3' -49.8 NC_004686.1 + 21249 0.69 0.829364
Target:  5'- gUGCCAGcccccgcGGCGCGGAacAACGCCUg- -3'
miRNA:   3'- aGCGGUU-------UCGUGCUUacUUGCGGAag -5'
19560 3' -49.8 NC_004686.1 + 22550 0.69 0.820778
Target:  5'- cCGCCGGGGCGgGGcugAUGAugGUCUc- -3'
miRNA:   3'- aGCGGUUUCGUgCU---UACUugCGGAag -5'
19560 3' -49.8 NC_004686.1 + 26323 0.66 0.935431
Target:  5'- aCGCCAAugcgcacaugaucGGCAuCGAAU--GCGCCUg- -3'
miRNA:   3'- aGCGGUU-------------UCGU-GCUUAcuUGCGGAag -5'
19560 3' -49.8 NC_004686.1 + 27233 0.68 0.890083
Target:  5'- gUCGCCGAccGGUuuCcAGUGAcacACGCCUUCc -3'
miRNA:   3'- -AGCGGUU--UCGu-GcUUACU---UGCGGAAG- -5'
19560 3' -49.8 NC_004686.1 + 29393 0.69 0.846877
Target:  5'- -gGCCGAuggugauguucuGCAUGAggGAAUGCCUUUc -3'
miRNA:   3'- agCGGUUu-----------CGUGCUuaCUUGCGGAAG- -5'
19560 3' -49.8 NC_004686.1 + 31363 0.67 0.91811
Target:  5'- aCGCCGaauucGAGCACGuguggGAACGCa--- -3'
miRNA:   3'- aGCGGU-----UUCGUGCuua--CUUGCGgaag -5'
19560 3' -49.8 NC_004686.1 + 32352 0.66 0.935983
Target:  5'- aCGCCcgguucagcAGCACGu----GCGCCUUCu -3'
miRNA:   3'- aGCGGuu-------UCGUGCuuacuUGCGGAAG- -5'
19560 3' -49.8 NC_004686.1 + 33880 0.7 0.75947
Target:  5'- cCGCgAGGGCGaGGAUGAcuuCGCCUUUg -3'
miRNA:   3'- aGCGgUUUCGUgCUUACUu--GCGGAAG- -5'
19560 3' -49.8 NC_004686.1 + 35354 0.67 0.91811
Target:  5'- aCGCCGAcGC-CGGAaccGAcaacuccaACGCCUUCg -3'
miRNA:   3'- aGCGGUUuCGuGCUUa--CU--------UGCGGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.