miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19560 5' -51.2 NC_004686.1 + 14594 0.66 0.914645
Target:  5'- -gGAGGUUGg-CGCCGCGCCa-CGGCu -3'
miRNA:   3'- caCUUUAGUagGUGGCGCGGaaGUCG- -5'
19560 5' -51.2 NC_004686.1 + 25335 0.66 0.914645
Target:  5'- -cGAucUCAUCgGCCaGUGCUUUCgcAGCa -3'
miRNA:   3'- caCUuuAGUAGgUGG-CGCGGAAG--UCG- -5'
19560 5' -51.2 NC_004686.1 + 42085 0.66 0.908005
Target:  5'- cUGGGAuugccccguacUCGUCgGCgGCaCCUUCAGCc -3'
miRNA:   3'- cACUUU-----------AGUAGgUGgCGcGGAAGUCG- -5'
19560 5' -51.2 NC_004686.1 + 12103 0.66 0.908005
Target:  5'- cUGcug-CggCUACCGCGgCUUCGGCu -3'
miRNA:   3'- cACuuuaGuaGGUGGCGCgGAAGUCG- -5'
19560 5' -51.2 NC_004686.1 + 24413 0.66 0.901074
Target:  5'- -----cUUGUCCGCCGCuGCCggUGGCg -3'
miRNA:   3'- cacuuuAGUAGGUGGCG-CGGaaGUCG- -5'
19560 5' -51.2 NC_004686.1 + 39269 0.66 0.901074
Target:  5'- -cGGccGGUCAUgcgccCCACCucuGCGCCcgUCGGCa -3'
miRNA:   3'- caCU--UUAGUA-----GGUGG---CGCGGa-AGUCG- -5'
19560 5' -51.2 NC_004686.1 + 1290 0.66 0.886354
Target:  5'- aUGGGuacg-CCGCCGCGCCcgCAGg -3'
miRNA:   3'- cACUUuaguaGGUGGCGCGGaaGUCg -5'
19560 5' -51.2 NC_004686.1 + 51097 0.66 0.886354
Target:  5'- -----cUCGUCCGCCGCGaggcuguaCCUggaCAGCc -3'
miRNA:   3'- cacuuuAGUAGGUGGCGC--------GGAa--GUCG- -5'
19560 5' -51.2 NC_004686.1 + 36833 0.66 0.886354
Target:  5'- --cGGGUCGUCaccacgACCGUGCCgaUCGGCg -3'
miRNA:   3'- cacUUUAGUAGg-----UGGCGCGGa-AGUCG- -5'
19560 5' -51.2 NC_004686.1 + 302 0.67 0.870526
Target:  5'- ------cCAUCCGaaGCGCCUcaUCAGUa -3'
miRNA:   3'- cacuuuaGUAGGUggCGCGGA--AGUCG- -5'
19560 5' -51.2 NC_004686.1 + 24527 0.67 0.870526
Target:  5'- gGUGGcggCcgCCGCCGCaGCgCUUCAcGCa -3'
miRNA:   3'- -CACUuuaGuaGGUGGCG-CG-GAAGU-CG- -5'
19560 5' -51.2 NC_004686.1 + 54799 0.67 0.869706
Target:  5'- aGUGGAG-CAUCCGCCucucaugacuacgGuCGCCUUCAu- -3'
miRNA:   3'- -CACUUUaGUAGGUGG-------------C-GCGGAAGUcg -5'
19560 5' -51.2 NC_004686.1 + 47604 0.67 0.862212
Target:  5'- aUGAAGUCgAUUgAUCGUGCCUgacCGGUa -3'
miRNA:   3'- cACUUUAG-UAGgUGGCGCGGAa--GUCG- -5'
19560 5' -51.2 NC_004686.1 + 3816 0.67 0.862212
Target:  5'- ---cAGUCcgCCGCCGCcGCCauggCGGCu -3'
miRNA:   3'- cacuUUAGuaGGUGGCG-CGGaa--GUCG- -5'
19560 5' -51.2 NC_004686.1 + 7844 0.67 0.844824
Target:  5'- -cGAGuUCAgCUAUCGCGUCggUCGGCa -3'
miRNA:   3'- caCUUuAGUaGGUGGCGCGGa-AGUCG- -5'
19560 5' -51.2 NC_004686.1 + 37512 0.68 0.81698
Target:  5'- uUGGAGUgCggCCACguguaGCGCgCUUCGGCg -3'
miRNA:   3'- cACUUUA-GuaGGUGg----CGCG-GAAGUCG- -5'
19560 5' -51.2 NC_004686.1 + 47897 0.68 0.797363
Target:  5'- aUGAcAUCcgCCcCCGCGCCaa-AGCg -3'
miRNA:   3'- cACUuUAGuaGGuGGCGCGGaagUCG- -5'
19560 5' -51.2 NC_004686.1 + 35194 0.68 0.796362
Target:  5'- --uGAGUCAUCCACCGCuugaacgGCUUcacccucggagaUCGGCu -3'
miRNA:   3'- cacUUUAGUAGGUGGCG-------CGGA------------AGUCG- -5'
19560 5' -51.2 NC_004686.1 + 49975 0.68 0.796362
Target:  5'- gGUGAucucgauGAUCGuUUCGCCGCGgCCUUCGucGCc -3'
miRNA:   3'- -CACU-------UUAGU-AGGUGGCGC-GGAAGU--CG- -5'
19560 5' -51.2 NC_004686.1 + 30530 0.69 0.766585
Target:  5'- gGUGGAGUgAUCCGggUCGCGU--UCAGCu -3'
miRNA:   3'- -CACUUUAgUAGGU--GGCGCGgaAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.