miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19561 3' -62.5 NC_004686.1 + 48901 0.67 0.272762
Target:  5'- -aCGCGgacGGCgCACGGaaucugGCCGCCGCCc- -3'
miRNA:   3'- agGCGU---UCG-GUGCCg-----UGGCGGCGGuu -5'
19561 3' -62.5 NC_004686.1 + 12507 0.67 0.272092
Target:  5'- cCCGCAGGgccaccuCCugGGCcgcagGCUGCCaGCCAGc -3'
miRNA:   3'- aGGCGUUC-------GGugCCG-----UGGCGG-CGGUU- -5'
19561 3' -62.5 NC_004686.1 + 32467 0.67 0.266125
Target:  5'- aCCGCGaucGGCCGCGGCGa-GCggagaGCCGAg -3'
miRNA:   3'- aGGCGU---UCGGUGCCGUggCGg----CGGUU- -5'
19561 3' -62.5 NC_004686.1 + 32387 0.67 0.266125
Target:  5'- cUCCGCucGCCGCGGCcgAUCGCgGUg-- -3'
miRNA:   3'- -AGGCGuuCGGUGCCG--UGGCGgCGguu -5'
19561 3' -62.5 NC_004686.1 + 13678 0.67 0.266125
Target:  5'- -gUGCAguugauucAGCCGCGGCGCUGgucCCGCCc- -3'
miRNA:   3'- agGCGU--------UCGGUGCCGUGGC---GGCGGuu -5'
19561 3' -62.5 NC_004686.1 + 15580 0.67 0.266125
Target:  5'- aUCCGCAgguAGUCGacUGGCAUCGCCaacuguccGCCAc -3'
miRNA:   3'- -AGGCGU---UCGGU--GCCGUGGCGG--------CGGUu -5'
19561 3' -62.5 NC_004686.1 + 22203 0.68 0.253246
Target:  5'- gCCGCcgAGGCCGCGcGCGCCaCUGCuCGAc -3'
miRNA:   3'- aGGCG--UUCGGUGC-CGUGGcGGCG-GUU- -5'
19561 3' -62.5 NC_004686.1 + 10433 0.68 0.247001
Target:  5'- aUCCGCGGGgaCCACGaCACCGCCaaCGAg -3'
miRNA:   3'- -AGGCGUUC--GGUGCcGUGGCGGcgGUU- -5'
19561 3' -62.5 NC_004686.1 + 22574 0.68 0.247001
Target:  5'- gCUGCccaccGGUgACGGuCAUCGCCGCCGGg -3'
miRNA:   3'- aGGCGu----UCGgUGCC-GUGGCGGCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 35155 0.68 0.234893
Target:  5'- aUCCGUAAGaCCGgugGGUA-CGCCGCCGAu -3'
miRNA:   3'- -AGGCGUUC-GGUg--CCGUgGCGGCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 12177 0.68 0.234893
Target:  5'- gCCGCGguAGCCGCaGCAgaaGCCGCCu- -3'
miRNA:   3'- aGGCGU--UCGGUGcCGUgg-CGGCGGuu -5'
19561 3' -62.5 NC_004686.1 + 22071 0.68 0.234893
Target:  5'- aCCGgAAuacGCCuuGGCACCGCCagcgccGCCGAg -3'
miRNA:   3'- aGGCgUU---CGGugCCGUGGCGG------CGGUU- -5'
19561 3' -62.5 NC_004686.1 + 14688 0.68 0.223288
Target:  5'- -gUGCGGGCCaguccgucaaauGCGGUGCCGCCGUUGGa -3'
miRNA:   3'- agGCGUUCGG------------UGCCGUGGCGGCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 24440 0.68 0.223288
Target:  5'- gCUGCGugaagcGCUGCGGCgGCgGCCGCCAc -3'
miRNA:   3'- aGGCGUu-----CGGUGCCG-UGgCGGCGGUu -5'
19561 3' -62.5 NC_004686.1 + 49677 0.68 0.223288
Target:  5'- gCCGCGAGCaCGCaGCGCaUGUgGCCGAg -3'
miRNA:   3'- aGGCGUUCG-GUGcCGUG-GCGgCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 15585 0.68 0.223288
Target:  5'- aCCGCAGGCCGucCGGUAaugaGCCGCa-- -3'
miRNA:   3'- aGGCGUUCGGU--GCCGUgg--CGGCGguu -5'
19561 3' -62.5 NC_004686.1 + 39846 0.69 0.214358
Target:  5'- aCCGUc-GCCGCGGCguccguguaggaggcGCCGUCGUCGAg -3'
miRNA:   3'- aGGCGuuCGGUGCCG---------------UGGCGGCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 2616 0.69 0.210548
Target:  5'- cUCCG-AGGCCAcuggugaguggaauCGGCGCCGUCGCgGu -3'
miRNA:   3'- -AGGCgUUCGGU--------------GCCGUGGCGGCGgUu -5'
19561 3' -62.5 NC_004686.1 + 18919 0.69 0.206797
Target:  5'- gUCCGgAuuggcGGUCucguCGcGCACCGCCGCCGu -3'
miRNA:   3'- -AGGCgU-----UCGGu---GC-CGUGGCGGCGGUu -5'
19561 3' -62.5 NC_004686.1 + 47892 0.69 0.206797
Target:  5'- aUCCGCccccgcGCCAaaGCGCCcguaGCCGCCAAc -3'
miRNA:   3'- -AGGCGuu----CGGUgcCGUGG----CGGCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.