miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19561 5' -58.4 NC_004686.1 + 14625 0.66 0.526795
Target:  5'- gGCCCGCAccgUC-GCCgaguuCGCCGACg-- -3'
miRNA:   3'- aUGGGCGU---AGuCGGac---GCGGCUGaag -5'
19561 5' -58.4 NC_004686.1 + 17710 0.66 0.516293
Target:  5'- uUGCCCGCAUCaauagaccAGCCgGCGUC-ACUc- -3'
miRNA:   3'- -AUGGGCGUAG--------UCGGaCGCGGcUGAag -5'
19561 5' -58.4 NC_004686.1 + 12231 0.66 0.505876
Target:  5'- gGCCC-CG-CGGCCUGacCGCCGGCg-- -3'
miRNA:   3'- aUGGGcGUaGUCGGAC--GCGGCUGaag -5'
19561 5' -58.4 NC_004686.1 + 30047 0.66 0.483288
Target:  5'- gUGCCUGUcUCAGCCggggucggugugGCGgCGGCUUg -3'
miRNA:   3'- -AUGGGCGuAGUCGGa-----------CGCgGCUGAAg -5'
19561 5' -58.4 NC_004686.1 + 13385 0.66 0.475194
Target:  5'- aGCCCGCcUCAGUgaauaugGCGUCGACa-- -3'
miRNA:   3'- aUGGGCGuAGUCGga-----CGCGGCUGaag -5'
19561 5' -58.4 NC_004686.1 + 26186 0.67 0.465173
Target:  5'- gAUCCGCAaCGGCC-GCcCCGACcUCg -3'
miRNA:   3'- aUGGGCGUaGUCGGaCGcGGCUGaAG- -5'
19561 5' -58.4 NC_004686.1 + 27570 0.67 0.445468
Target:  5'- gUACCCGCAUCGGgC-GgGUCGAUUg- -3'
miRNA:   3'- -AUGGGCGUAGUCgGaCgCGGCUGAag -5'
19561 5' -58.4 NC_004686.1 + 26610 0.67 0.433872
Target:  5'- cACCCGCcgaucgaaccgCAGCCcGgGCCGACg-- -3'
miRNA:   3'- aUGGGCGua---------GUCGGaCgCGGCUGaag -5'
19561 5' -58.4 NC_004686.1 + 21885 0.68 0.407512
Target:  5'- cACCCGCAaguGCgUcGCGCCGACa-- -3'
miRNA:   3'- aUGGGCGUaguCGgA-CGCGGCUGaag -5'
19561 5' -58.4 NC_004686.1 + 9292 0.69 0.363022
Target:  5'- gGCgCCGCcgaaugugAUCGGCCUGUGCgCGuuuCUUCu -3'
miRNA:   3'- aUG-GGCG--------UAGUCGGACGCG-GCu--GAAG- -5'
19561 5' -58.4 NC_004686.1 + 10680 0.7 0.30661
Target:  5'- cGCCCaaaGCAUCGGCgacCUGCGCggCGGCUUUc -3'
miRNA:   3'- aUGGG---CGUAGUCG---GACGCG--GCUGAAG- -5'
19561 5' -58.4 NC_004686.1 + 12090 0.72 0.231943
Target:  5'- gUACCCGCAaCAcugguguuGCCgGCGCCGGCg-- -3'
miRNA:   3'- -AUGGGCGUaGU--------CGGaCGCGGCUGaag -5'
19561 5' -58.4 NC_004686.1 + 2817 0.72 0.203388
Target:  5'- gUugCCGUAcaAGCCUGCGCCGAagcgUCc -3'
miRNA:   3'- -AugGGCGUagUCGGACGCGGCUga--AG- -5'
19561 5' -58.4 NC_004686.1 + 3494 1.08 0.000451
Target:  5'- aUACCCGCAUCAGCCUGCGCCGACUUCg -3'
miRNA:   3'- -AUGGGCGUAGUCGGACGCGGCUGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.