miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19563 3' -52.3 NC_004686.1 + 13038 0.66 0.854334
Target:  5'- -cGCgGCGCUGC-CGAGCAcccUGcUUCCAc -3'
miRNA:   3'- cuUGgCGUGGCGuGCUUGU---AC-AAGGU- -5'
19563 3' -52.3 NC_004686.1 + 31270 0.66 0.854334
Target:  5'- cGGCCGCACgaaaugGCGCGGACcaGUG-UCCGg -3'
miRNA:   3'- cUUGGCGUGg-----CGUGCUUG--UACaAGGU- -5'
19563 3' -52.3 NC_004686.1 + 10193 0.66 0.84562
Target:  5'- uGAACCGCGCCau-CGAACGacUGgcCCAu -3'
miRNA:   3'- -CUUGGCGUGGcguGCUUGU--ACaaGGU- -5'
19563 3' -52.3 NC_004686.1 + 51344 0.66 0.84562
Target:  5'- --cCCGCGCCGCAguGACAU--UCCGg -3'
miRNA:   3'- cuuGGCGUGGCGUgcUUGUAcaAGGU- -5'
19563 3' -52.3 NC_004686.1 + 5335 0.66 0.844736
Target:  5'- aGAGCCGCACCGgugaGCGggUugaugccGUGgaugCCGa -3'
miRNA:   3'- -CUUGGCGUGGCg---UGCuuG-------UACaa--GGU- -5'
19563 3' -52.3 NC_004686.1 + 5619 0.66 0.836672
Target:  5'- --uCCGgGCCGcCACGGACGgugUCCGa -3'
miRNA:   3'- cuuGGCgUGGC-GUGCUUGUacaAGGU- -5'
19563 3' -52.3 NC_004686.1 + 5583 0.67 0.827498
Target:  5'- cGGugUGUACCGCAccaccaaccCGAACGUGaaggCCAu -3'
miRNA:   3'- -CUugGCGUGGCGU---------GCUUGUACaa--GGU- -5'
19563 3' -52.3 NC_004686.1 + 39801 0.67 0.827498
Target:  5'- cGGGCCGC-CUGgGCcaGGACAUGUUCa- -3'
miRNA:   3'- -CUUGGCGuGGCgUG--CUUGUACAAGgu -5'
19563 3' -52.3 NC_004686.1 + 39305 0.68 0.778616
Target:  5'- -cACCGCACCGUGC-AGCGUGc-CCGc -3'
miRNA:   3'- cuUGGCGUGGCGUGcUUGUACaaGGU- -5'
19563 3' -52.3 NC_004686.1 + 28185 0.68 0.778616
Target:  5'- aGAGCaGCACCGCcaGCGAugcucaACGUGgcuUUCCAg -3'
miRNA:   3'- -CUUGgCGUGGCG--UGCU------UGUAC---AAGGU- -5'
19563 3' -52.3 NC_004686.1 + 1908 0.69 0.714857
Target:  5'- -cGCCGCACCGguCGAAuCAUGcuugauaggugUCCGu -3'
miRNA:   3'- cuUGGCGUGGCguGCUU-GUACa----------AGGU- -5'
19563 3' -52.3 NC_004686.1 + 4707 0.69 0.692789
Target:  5'- aGACCGCGCCGCG-GAGCAggcgaaugCCGa -3'
miRNA:   3'- cUUGGCGUGGCGUgCUUGUacaa----GGU- -5'
19563 3' -52.3 NC_004686.1 + 48347 0.69 0.681657
Target:  5'- gGGAUCGaACCGgGCGAACAUGUcuauagCCAu -3'
miRNA:   3'- -CUUGGCgUGGCgUGCUUGUACAa-----GGU- -5'
19563 3' -52.3 NC_004686.1 + 45603 0.69 0.670476
Target:  5'- aGGCUGCgcaACCGCAUGuACGUGUUCg- -3'
miRNA:   3'- cUUGGCG---UGGCGUGCuUGUACAAGgu -5'
19563 3' -52.3 NC_004686.1 + 14550 0.69 0.670476
Target:  5'- cGGgUGCACUGCACGGACA-GUUCg- -3'
miRNA:   3'- cUUgGCGUGGCGUGCUUGUaCAAGgu -5'
19563 3' -52.3 NC_004686.1 + 39802 0.7 0.648011
Target:  5'- cGAACCGCGuuGCGCc-GCAaGUUCCc -3'
miRNA:   3'- -CUUGGCGUggCGUGcuUGUaCAAGGu -5'
19563 3' -52.3 NC_004686.1 + 42390 0.7 0.625485
Target:  5'- gGAACCGCAUCaGCACccGCAUcaGUUCCu -3'
miRNA:   3'- -CUUGGCGUGG-CGUGcuUGUA--CAAGGu -5'
19563 3' -52.3 NC_004686.1 + 15604 0.72 0.536395
Target:  5'- uGAGCCGCACUGgcugaccucacCugGGACGUggGUUCCGg -3'
miRNA:   3'- -CUUGGCGUGGC-----------GugCUUGUA--CAAGGU- -5'
19563 3' -52.3 NC_004686.1 + 6465 1.09 0.002082
Target:  5'- aGAACCGCACCGCACGAACAUGUUCCAc -3'
miRNA:   3'- -CUUGGCGUGGCGUGCUUGUACAAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.