miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19563 5' -53.1 NC_004686.1 + 28993 0.66 0.813632
Target:  5'- -uCAGGGguGuguGUCGGCGuggGGUGGUGc- -3'
miRNA:   3'- cuGUCUCguC---UAGCCGC---UCACCAUua -5'
19563 5' -53.1 NC_004686.1 + 26440 0.66 0.79394
Target:  5'- ---uGGGCAGGUCggGGCGGGgGGUGGg -3'
miRNA:   3'- cuguCUCGUCUAG--CCGCUCaCCAUUa -5'
19563 5' -53.1 NC_004686.1 + 35509 0.66 0.77353
Target:  5'- uGGCAuGAGUcGcgCGGUGAGUGGgugAAUg -3'
miRNA:   3'- -CUGU-CUCGuCuaGCCGCUCACCa--UUA- -5'
19563 5' -53.1 NC_004686.1 + 23941 0.67 0.763087
Target:  5'- -cCAGAGUgaAGAUCGGCGAa-GGUGu- -3'
miRNA:   3'- cuGUCUCG--UCUAGCCGCUcaCCAUua -5'
19563 5' -53.1 NC_004686.1 + 38030 0.67 0.762035
Target:  5'- uGACGG-GCAGGUCGGCccaguugGuuUGGUGGUu -3'
miRNA:   3'- -CUGUCuCGUCUAGCCG-------CucACCAUUA- -5'
19563 5' -53.1 NC_004686.1 + 53756 0.67 0.752501
Target:  5'- aGACGGAGCAGAUCaGGauCGAcagaucUGGUGGUu -3'
miRNA:   3'- -CUGUCUCGUCUAG-CC--GCUc-----ACCAUUA- -5'
19563 5' -53.1 NC_004686.1 + 31137 0.67 0.720012
Target:  5'- uGACGGAGaAGAuUCGGCGugcuGUGGUc-- -3'
miRNA:   3'- -CUGUCUCgUCU-AGCCGCu---CACCAuua -5'
19563 5' -53.1 NC_004686.1 + 22630 0.68 0.664178
Target:  5'- gGugAGGGCGGcugCGGCGGGUuGUAGg -3'
miRNA:   3'- -CugUCUCGUCua-GCCGCUCAcCAUUa -5'
19563 5' -53.1 NC_004686.1 + 27498 0.69 0.6302
Target:  5'- aGACcccGGCGGAagUCGGCGAGccGGUAGUg -3'
miRNA:   3'- -CUGuc-UCGUCU--AGCCGCUCa-CCAUUA- -5'
19563 5' -53.1 NC_004686.1 + 19278 0.69 0.630199
Target:  5'- uGugAGGGCGGu---GCGGGUGGUGAUu -3'
miRNA:   3'- -CugUCUCGUCuagcCGCUCACCAUUA- -5'
19563 5' -53.1 NC_004686.1 + 6431 1.05 0.002512
Target:  5'- aGACAGAGCAGAUCGGCGAGUGGUAAUu -3'
miRNA:   3'- -CUGUCUCGUCUAGCCGCUCACCAUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.