Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19564 | 3' | -59.7 | NC_004686.1 | + | 39839 | 0.67 | 0.460055 |
Target: 5'- cCGCGGCguccguguaggaGGCgccgUCgUCGAGCaggcggGCCGCCu -3' miRNA: 3'- -GCGCCG------------CCGa---AGgAGCUUG------CGGUGGu -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 22138 | 0.66 | 0.466825 |
Target: 5'- uCGCGGUGaGCgacacgCCacccgaggugaaugUCGAcGCGCCGCCGu -3' miRNA: 3'- -GCGCCGC-CGaa----GG--------------AGCU-UGCGGUGGU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 40196 | 0.69 | 0.336946 |
Target: 5'- aGUGGuCGGCgUUCacgCUCGGACagGCCGCCGa -3' miRNA: 3'- gCGCC-GCCG-AAG---GAGCUUG--CGGUGGU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 12271 | 0.69 | 0.329124 |
Target: 5'- aGCGGCGuuaGCacccaacCCgauugCGAACGCCGCCGc -3' miRNA: 3'- gCGCCGC---CGaa-----GGa----GCUUGCGGUGGU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 41411 | 0.69 | 0.320677 |
Target: 5'- aGCGGCgaggucucgGGCUUCCUccacCGAaucgagaugggcaGCGCCGCUg -3' miRNA: 3'- gCGCCG---------CCGAAGGA----GCU-------------UGCGGUGGu -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 48988 | 0.69 | 0.313887 |
Target: 5'- gGCGGCGGCcagaUUCCgu--GCGCCGuCCGc -3' miRNA: 3'- gCGCCGCCG----AAGGagcuUGCGGU-GGU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 38720 | 0.71 | 0.251955 |
Target: 5'- cCGCaGCGGCga-CgaaGAACGCCACCu -3' miRNA: 3'- -GCGcCGCCGaagGag-CUUGCGGUGGu -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 10659 | 0.72 | 0.222107 |
Target: 5'- gCGCGGCGGCUuucgUCUUCGcAGC-CCACg- -3' miRNA: 3'- -GCGCCGCCGA----AGGAGC-UUGcGGUGgu -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 50685 | 0.72 | 0.200443 |
Target: 5'- cCGCGGCGGCUUCCUCuu-UGgC-CCGg -3' miRNA: 3'- -GCGCCGCCGAAGGAGcuuGCgGuGGU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 1363 | 0.72 | 0.200443 |
Target: 5'- gCGCGGCGGCguaCCcauaaaGAACGCCAacCCGa -3' miRNA: 3'- -GCGCCGCCGaa-GGag----CUUGCGGU--GGU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 7093 | 1.08 | 0.000511 |
Target: 5'- uCGCGGCGGCUUCCUCGAACGCCACCAc -3' miRNA: 3'- -GCGCCGCCGAAGGAGCUUGCGGUGGU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 3803 | 0.66 | 0.509481 |
Target: 5'- cCGCcauGGCGGCUUCgCUCc-ACGUCuCCAa -3' miRNA: 3'- -GCG---CCGCCGAAG-GAGcuUGCGGuGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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