miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19564 5' -54.2 NC_004686.1 + 15851 0.66 0.807648
Target:  5'- uGUCG-UCGuAGCgUGUGccGUAGUCGCCg -3'
miRNA:   3'- -CGGCuAGCcUCGaACAU--CAUCGGCGG- -5'
19564 5' -54.2 NC_004686.1 + 12196 0.66 0.805743
Target:  5'- cGCCGuugCGGcAGCcgaagccgcGGUAGCCGCa -3'
miRNA:   3'- -CGGCua-GCC-UCGaaca-----UCAUCGGCGg -5'
19564 5' -54.2 NC_004686.1 + 50724 0.66 0.768277
Target:  5'- uGgCGAUCaGGGC--GUGGaccugAGCCGCCu -3'
miRNA:   3'- -CgGCUAGcCUCGaaCAUCa----UCGGCGG- -5'
19564 5' -54.2 NC_004686.1 + 54320 0.66 0.766243
Target:  5'- uGCCGGUaggcguUGGGGCUguguuccgcggcGUAcUGGCUGCCa -3'
miRNA:   3'- -CGGCUA------GCCUCGAa-----------CAUcAUCGGCGG- -5'
19564 5' -54.2 NC_004686.1 + 33545 0.66 0.758055
Target:  5'- aCCGaAUCGGAGCUgauggcacugGUGG-GGCUGUUa -3'
miRNA:   3'- cGGC-UAGCCUCGAa---------CAUCaUCGGCGG- -5'
19564 5' -54.2 NC_004686.1 + 24558 0.66 0.754962
Target:  5'- aCCGGUCaccaGGuGUcgGUGGUcucgacaugguggcGGCCGCCg -3'
miRNA:   3'- cGGCUAG----CCuCGaaCAUCA--------------UCGGCGG- -5'
19564 5' -54.2 NC_004686.1 + 9959 0.67 0.730901
Target:  5'- cGCCGAUCGuGGGUUgccgaucucacGUGGCUGCa -3'
miRNA:   3'- -CGGCUAGC-CUCGAacau-------CAUCGGCGg -5'
19564 5' -54.2 NC_004686.1 + 36748 0.68 0.672592
Target:  5'- cGCCGAUCGGcacGGUc-GUGGUGacgacCCGCCc -3'
miRNA:   3'- -CGGCUAGCC---UCGaaCAUCAUc----GGCGG- -5'
19564 5' -54.2 NC_004686.1 + 53310 0.68 0.672592
Target:  5'- uGCUGGugUCGGuGCUgcUGUgcGGUuuuGGCUGCCg -3'
miRNA:   3'- -CGGCU--AGCCuCGA--ACA--UCA---UCGGCGG- -5'
19564 5' -54.2 NC_004686.1 + 17874 0.68 0.66162
Target:  5'- cGCCGAgugCGGcGgaUGUGG-AGUgGCCg -3'
miRNA:   3'- -CGGCUa--GCCuCgaACAUCaUCGgCGG- -5'
19564 5' -54.2 NC_004686.1 + 11915 0.69 0.628579
Target:  5'- gGCCGGUCGGuGCcgGUGGgcaacCCGUCc -3'
miRNA:   3'- -CGGCUAGCCuCGaaCAUCauc--GGCGG- -5'
19564 5' -54.2 NC_004686.1 + 20986 0.69 0.617558
Target:  5'- cGCCGAUCacugguauugGGGGCgguacggGUAGUuucGCUGCUg -3'
miRNA:   3'- -CGGCUAG----------CCUCGaa-----CAUCAu--CGGCGG- -5'
19564 5' -54.2 NC_004686.1 + 14053 0.69 0.60655
Target:  5'- cGCUGGUCGGgccGGCUugauaagugUGUGGUGGaguaCCGCg -3'
miRNA:   3'- -CGGCUAGCC---UCGA---------ACAUCAUC----GGCGg -5'
19564 5' -54.2 NC_004686.1 + 53409 0.72 0.458371
Target:  5'- uGUCGA-CGGAGCUggcccGUucgcGUGGCCGCa -3'
miRNA:   3'- -CGGCUaGCCUCGAa----CAu---CAUCGGCGg -5'
19564 5' -54.2 NC_004686.1 + 11381 0.72 0.438701
Target:  5'- aGCCGAUcgaccCGGAcgauuaccuGUUUccggaGUGGUGGCCGCCc -3'
miRNA:   3'- -CGGCUA-----GCCU---------CGAA-----CAUCAUCGGCGG- -5'
19564 5' -54.2 NC_004686.1 + 3637 0.72 0.419524
Target:  5'- gGUCGAUCaGAGCUUGcAGcguGCCGCg -3'
miRNA:   3'- -CGGCUAGcCUCGAACaUCau-CGGCGg -5'
19564 5' -54.2 NC_004686.1 + 6993 0.77 0.238918
Target:  5'- uCCGAUCGGcuGGUggUGUGGUggcguucgaggaAGCCGCCg -3'
miRNA:   3'- cGGCUAGCC--UCGa-ACAUCA------------UCGGCGG- -5'
19564 5' -54.2 NC_004686.1 + 7059 1.15 0.000536
Target:  5'- aGCCGAUCGGAGCUUGUAGUAGCCGCCg -3'
miRNA:   3'- -CGGCUAGCCUCGAACAUCAUCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.