miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19565 3' -55.3 NC_004686.1 + 9891 0.66 0.699978
Target:  5'- gGUGagagacuGUccaGUGGgGACGCCgGCGGCGACc -3'
miRNA:   3'- gCACg------CA---UACCaCUGUGG-CGUCGCUG- -5'
19565 3' -55.3 NC_004686.1 + 18268 0.67 0.634381
Target:  5'- gGUGgGU-UGGUGggucaGCACgGCAGCGGg -3'
miRNA:   3'- gCACgCAuACCAC-----UGUGgCGUCGCUg -5'
19565 3' -55.3 NC_004686.1 + 39368 0.68 0.612389
Target:  5'- gGUGCG-GUGGUGGCagcccaGCUGUucGGCGAUc -3'
miRNA:   3'- gCACGCaUACCACUG------UGGCG--UCGCUG- -5'
19565 3' -55.3 NC_004686.1 + 28783 0.68 0.590465
Target:  5'- -aUGCGgcgGGUGuCGCCGCGGUGu- -3'
miRNA:   3'- gcACGCauaCCACuGUGGCGUCGCug -5'
19565 3' -55.3 NC_004686.1 + 39758 0.68 0.587186
Target:  5'- aCG-GCGccuccuacacgGACGCCGCGGCGACg -3'
miRNA:   3'- -GCaCGCauacca-----CUGUGGCGUCGCUG- -5'
19565 3' -55.3 NC_004686.1 + 40596 0.68 0.568681
Target:  5'- cCGUGCccguUGG-GACACCGguuGCGACg -3'
miRNA:   3'- -GCACGcau-ACCaCUGUGGCgu-CGCUG- -5'
19565 3' -55.3 NC_004686.1 + 22003 0.7 0.494438
Target:  5'- --gGCGUAUuccGGUGACggcaaggacggcGCCGaCGGCGGCg -3'
miRNA:   3'- gcaCGCAUA---CCACUG------------UGGC-GUCGCUG- -5'
19565 3' -55.3 NC_004686.1 + 14075 0.7 0.474018
Target:  5'- --aGUGUGUGGUGGagUACCGCgaagacGGUGACg -3'
miRNA:   3'- gcaCGCAUACCACU--GUGGCG------UCGCUG- -5'
19565 3' -55.3 NC_004686.1 + 7004 0.7 0.454029
Target:  5'- gGUG-GUGUGGUGGCguucgaggaaGCCGCcGCGAa -3'
miRNA:   3'- gCACgCAUACCACUG----------UGGCGuCGCUg -5'
19565 3' -55.3 NC_004686.1 + 45471 0.7 0.454029
Target:  5'- aCGUGUGUGUGG-GGCACCcaugGCAcacGCGGa -3'
miRNA:   3'- -GCACGCAUACCaCUGUGG----CGU---CGCUg -5'
19565 3' -55.3 NC_004686.1 + 15678 0.71 0.434506
Target:  5'- gCGaUGCG-GUGGcccggcUGACGCCGCAGCaGCa -3'
miRNA:   3'- -GC-ACGCaUACC------ACUGUGGCGUCGcUG- -5'
19565 3' -55.3 NC_004686.1 + 33232 0.71 0.406158
Target:  5'- uGUGUGgcguUGGUGGCuaGCCcCGGCGGCa -3'
miRNA:   3'- gCACGCau--ACCACUG--UGGcGUCGCUG- -5'
19565 3' -55.3 NC_004686.1 + 7230 1.1 0.000841
Target:  5'- uCGUGCGUAUGGUGACACCGCAGCGACg -3'
miRNA:   3'- -GCACGCAUACCACUGUGGCGUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.