miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19565 5' -63.5 NC_004686.1 + 30400 0.66 0.30935
Target:  5'- gUGUGGUgGCUGUGagggugauuacgGCCCUaCUGGCg -3'
miRNA:   3'- aACACCGgCGGCACg-----------UGGGAcGGCCG- -5'
19565 5' -63.5 NC_004686.1 + 26305 0.66 0.294237
Target:  5'- -cGUGGCUGCCGacaaacaacgccaaUGCGCacaUGaUCGGCa -3'
miRNA:   3'- aaCACCGGCGGC--------------ACGUGgg-AC-GGCCG- -5'
19565 5' -63.5 NC_004686.1 + 14150 0.66 0.289329
Target:  5'- -aGUGGUauuCCGUGUggaguaACCCuugguUGCCGGCu -3'
miRNA:   3'- aaCACCGgc-GGCACG------UGGG-----ACGGCCG- -5'
19565 5' -63.5 NC_004686.1 + 56082 0.66 0.282429
Target:  5'- -gGUGGacccgcgaCGCCGUGCACCuCUGaCCa-- -3'
miRNA:   3'- aaCACCg-------GCGGCACGUGG-GAC-GGccg -5'
19565 5' -63.5 NC_004686.1 + 38958 0.67 0.262512
Target:  5'- -cGUGGCgaGCUG-GCACCggugaaGCCGGCc -3'
miRNA:   3'- aaCACCGg-CGGCaCGUGGga----CGGCCG- -5'
19565 5' -63.5 NC_004686.1 + 33668 0.67 0.256132
Target:  5'- --cUGGCCuuccgcuucauGCgGUGCuCCC-GCCGGCg -3'
miRNA:   3'- aacACCGG-----------CGgCACGuGGGaCGGCCG- -5'
19565 5' -63.5 NC_004686.1 + 53283 0.67 0.243753
Target:  5'- --uUGGCUGCCgGUGUggcuugucaucGCCCUGaCUGGUg -3'
miRNA:   3'- aacACCGGCGG-CACG-----------UGGGAC-GGCCG- -5'
19565 5' -63.5 NC_004686.1 + 19482 0.67 0.238346
Target:  5'- -gGUGGCugggugaaguuuuacCGCCGUGCGguggaugcgccuacCCCggaGCCGGUu -3'
miRNA:   3'- aaCACCG---------------GCGGCACGU--------------GGGa--CGGCCG- -5'
19565 5' -63.5 NC_004686.1 + 19162 0.67 0.237752
Target:  5'- ---gGGCCaGCCGcccucaccgaacUGCGCcaaagacgCCUGCCGGCc -3'
miRNA:   3'- aacaCCGG-CGGC------------ACGUG--------GGACGGCCG- -5'
19565 5' -63.5 NC_004686.1 + 50569 0.68 0.231875
Target:  5'- ---cGGCCGCaagauCGUGUcCCCUGCCGa- -3'
miRNA:   3'- aacaCCGGCG-----GCACGuGGGACGGCcg -5'
19565 5' -63.5 NC_004686.1 + 31955 0.68 0.226121
Target:  5'- aUUGUGGa-GCCGuUGCGggaUCUGCUGGCg -3'
miRNA:   3'- -AACACCggCGGC-ACGUg--GGACGGCCG- -5'
19565 5' -63.5 NC_004686.1 + 32088 0.68 0.198127
Target:  5'- gUGUGGCCGCaagcaugggucucgGUGCACggauccggugugggaUUUGCCGGUg -3'
miRNA:   3'- aACACCGGCGg-------------CACGUG---------------GGACGGCCG- -5'
19565 5' -63.5 NC_004686.1 + 23460 0.69 0.179624
Target:  5'- --uUGGCCGCUGgaacuUGgACCCUGCCGu- -3'
miRNA:   3'- aacACCGGCGGC-----ACgUGGGACGGCcg -5'
19565 5' -63.5 NC_004686.1 + 12696 0.7 0.153525
Target:  5'- aUG-GGCCGCaaUGCACCCcuUGUgGGCa -3'
miRNA:   3'- aACaCCGGCGgcACGUGGG--ACGgCCG- -5'
19565 5' -63.5 NC_004686.1 + 12417 0.73 0.09465
Target:  5'- -cGUGGCCGCCG-GCAuagccgccCCUUG-CGGCa -3'
miRNA:   3'- aaCACCGGCGGCaCGU--------GGGACgGCCG- -5'
19565 5' -63.5 NC_004686.1 + 10978 0.77 0.046056
Target:  5'- gUUGUGGgCGgCGUGUACCCcGCCGGg -3'
miRNA:   3'- -AACACCgGCgGCACGUGGGaCGGCCg -5'
19565 5' -63.5 NC_004686.1 + 7186 1.08 0.000175
Target:  5'- cUUGUGGCCGCCGUGCACCCUGCCGGCu -3'
miRNA:   3'- -AACACCGGCGGCACGUGGGACGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.