miRNA: 3'- -GCGCCUACC-GG--------------GGGGGCacgAGAGGc -5'
miRNA: 3'- -GCGCCU--ACCGGGGGGGcaCGAGaGGC- -5'
miRNA: 3'- -GCGCCUACCGGGGGGGCACGAGAGGC- -5'
Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 19568 | 3' | -64.2 | NC_004686.1 | + | 8921 | 0.68 | 0.231629 |
|
Target: 5'- cCGCGGAUGGaCCauccgagacaucggCCCCCGaa-UCUCCu -3' miRNA: 3'- -GCGCCUACC-GG--------------GGGGGCacgAGAGGc -5' |
|||||||
| 19568 | 3' | -64.2 | NC_004686.1 | + | 37235 | 0.69 | 0.211426 |
|
Target: 5'- gCGCGGGcaUGGUUCCCCC--GCUCcCCGc -3' miRNA: 3'- -GCGCCU--ACCGGGGGGGcaCGAGaGGC- -5' |
|||||||
| 19568 | 3' | -64.2 | NC_004686.1 | + | 8963 | 1.07 | 0.000221 |
|
Target: 5'- gCGCGGAUGGCCCCCCCGUGCUCUCCGu -3' miRNA: 3'- -GCGCCUACCGGGGGGGCACGAGAGGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home