Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19570 | 5' | -53 | NC_004686.1 | + | 36814 | 0.67 | 0.776783 |
Target: 5'- -gGGAGAcgUGGaucGCCCAuCGGUUGGCa -3' miRNA: 3'- caCUUCUa-GCCgu-UGGGU-GCUAGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 15126 | 0.67 | 0.776783 |
Target: 5'- cUGAAGGUuaucgaCGGUGcCCCGuaccUGAUCGGCg -3' miRNA: 3'- cACUUCUA------GCCGUuGGGU----GCUAGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 9352 | 0.67 | 0.773739 |
Target: 5'- aUGAGGcggaGUCGGCGuCCCGCcguuccgggcagaaGAUCGGg -3' miRNA: 3'- cACUUC----UAGCCGUuGGGUG--------------CUAGCCg -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 5922 | 0.68 | 0.735183 |
Target: 5'- gGUGGcuAUCGGCuGCCgGCGAaacgugcagCGGCg -3' miRNA: 3'- -CACUucUAGCCGuUGGgUGCUa--------GCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 20043 | 0.69 | 0.70283 |
Target: 5'- cGUGuuGAU-GGCAAUCCAgGA-CGGCc -3' miRNA: 3'- -CACuuCUAgCCGUUGGGUgCUaGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 39440 | 0.69 | 0.70283 |
Target: 5'- uUGGGuGUUgGGCAGgCCACGAucUCGGCg -3' miRNA: 3'- cACUUcUAG-CCGUUgGGUGCU--AGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 5677 | 0.69 | 0.691889 |
Target: 5'- cUGAucgAGuUCGGCGACCCggACGGUCugGGUg -3' miRNA: 3'- cACU---UCuAGCCGUUGGG--UGCUAG--CCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 9253 | 0.69 | 0.691889 |
Target: 5'- cGUcGAGuUCGGCGACCgaucuCACGGcCGGCg -3' miRNA: 3'- -CAcUUCuAGCCGUUGG-----GUGCUaGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 37531 | 0.69 | 0.68089 |
Target: 5'- -gGAAGAcgacUCGGCuGCUUugGAgugCGGCc -3' miRNA: 3'- caCUUCU----AGCCGuUGGGugCUa--GCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 27749 | 0.69 | 0.68089 |
Target: 5'- ----cGGUCGGaccacCGACCCACGAguuuUCGGUg -3' miRNA: 3'- cacuuCUAGCC-----GUUGGGUGCU----AGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 42015 | 0.69 | 0.669842 |
Target: 5'- -cGAAGAUgauaggaccgCuGCGGCCCACGAUuuccCGGCc -3' miRNA: 3'- caCUUCUA----------GcCGUUGGGUGCUA----GCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 9876 | 0.69 | 0.658759 |
Target: 5'- aGUGggGAcgccggCGGCGACCgCAgUGG-CGGCa -3' miRNA: 3'- -CACuuCUa-----GCCGUUGG-GU-GCUaGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 39368 | 0.69 | 0.658759 |
Target: 5'- gGUGcGGuggUGGCAGCCCAgcUGuUCGGCg -3' miRNA: 3'- -CACuUCua-GCCGUUGGGU--GCuAGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 13580 | 0.7 | 0.636527 |
Target: 5'- -gGucGAUCGuCAACCCGCcAUCGGUg -3' miRNA: 3'- caCuuCUAGCcGUUGGGUGcUAGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 12873 | 0.7 | 0.636527 |
Target: 5'- -------aCGGCGAggaCCGCGGUCGGCa -3' miRNA: 3'- cacuucuaGCCGUUg--GGUGCUAGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 4187 | 0.7 | 0.6254 |
Target: 5'- -gGAAGAUCGu--GCCCGCGugCGGCa -3' miRNA: 3'- caCUUCUAGCcguUGGGUGCuaGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 19089 | 0.7 | 0.614279 |
Target: 5'- gGUGAGGG-CGGCuGGCCCGguaagcCGAaCGGCa -3' miRNA: 3'- -CACUUCUaGCCG-UUGGGU------GCUaGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 49887 | 0.7 | 0.610945 |
Target: 5'- -cGAAGGccgCGGCGAacgaucaucgagauCaCCGCGAUCGGUg -3' miRNA: 3'- caCUUCUa--GCCGUU--------------G-GGUGCUAGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 3978 | 0.7 | 0.603174 |
Target: 5'- -gGAGGAUCcGCAGgCCGCGGauacaugCGGCg -3' miRNA: 3'- caCUUCUAGcCGUUgGGUGCUa------GCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 47562 | 0.7 | 0.603174 |
Target: 5'- uUGGAGcgcCGGCuGGCCCGCGcuGUCGGUc -3' miRNA: 3'- cACUUCua-GCCG-UUGGGUGC--UAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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