miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19572 3' -55.3 NC_004686.1 + 4818 0.67 0.635159
Target:  5'- uUCGGaUGUUUcuucuUGCGCUcgGCCUCGGCAu- -3'
miRNA:   3'- -GGUC-GCAAG-----ACGCGA--CGGAGUCGUuc -5'
19572 3' -55.3 NC_004686.1 + 32419 0.67 0.612992
Target:  5'- aCGGCGaaugUCUGCcgGCUGaagaUCGGCAAGu -3'
miRNA:   3'- gGUCGCa---AGACG--CGACgg--AGUCGUUC- -5'
19572 3' -55.3 NC_004686.1 + 18686 0.67 0.610777
Target:  5'- aCCAGCuugacgagGCGCUGCCccgcgagaUCAGCGAc -3'
miRNA:   3'- -GGUCGcaaga---CGCGACGG--------AGUCGUUc -5'
19572 3' -55.3 NC_004686.1 + 38250 0.68 0.590892
Target:  5'- gCgGGCGUUCaugcUGCGuCUcCCUCGGUGAGg -3'
miRNA:   3'- -GgUCGCAAG----ACGC-GAcGGAGUCGUUC- -5'
19572 3' -55.3 NC_004686.1 + 48450 0.68 0.568933
Target:  5'- aCUGGCcUUCgGCGCUGuUCUCGGCGGa -3'
miRNA:   3'- -GGUCGcAAGaCGCGAC-GGAGUCGUUc -5'
19572 3' -55.3 NC_004686.1 + 22122 0.69 0.525702
Target:  5'- gCAGUGgcgcGCGCgGCCUCGGCGGc -3'
miRNA:   3'- gGUCGCaagaCGCGaCGGAGUCGUUc -5'
19572 3' -55.3 NC_004686.1 + 3354 0.69 0.524636
Target:  5'- gCCGGCGUgaaaucaUCcaccGCGCcuucaGCCUCAGCGAu -3'
miRNA:   3'- -GGUCGCA-------AGa---CGCGa----CGGAGUCGUUc -5'
19572 3' -55.3 NC_004686.1 + 34796 0.7 0.463411
Target:  5'- gCCGGCGaacUUCUGcCGCUGCCaccgauucgcuUCGGCu-- -3'
miRNA:   3'- -GGUCGC---AAGAC-GCGACGG-----------AGUCGuuc -5'
19572 3' -55.3 NC_004686.1 + 41024 0.75 0.247484
Target:  5'- aUCAGCGgcUUGCGCUcGCUUCAGUAGu -3'
miRNA:   3'- -GGUCGCaaGACGCGA-CGGAGUCGUUc -5'
19572 3' -55.3 NC_004686.1 + 10607 1.11 0.000607
Target:  5'- cCCAGCGUUCUGCGCUGCCUCAGCAAGg -3'
miRNA:   3'- -GGUCGCAAGACGCGACGGAGUCGUUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.