miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19572 5' -56.6 NC_004686.1 + 51637 0.66 0.661161
Target:  5'- cCACCUcgCcGAcGUCCCUgaagaggucggugcCGCCgCAGCg -3'
miRNA:   3'- -GUGGAa-GaCUuCAGGGA--------------GCGGgGUCG- -5'
19572 5' -56.6 NC_004686.1 + 37817 0.66 0.609867
Target:  5'- uCGCCUUCaaUGgcGcUCCacgaCGCCCCGGUc -3'
miRNA:   3'- -GUGGAAG--ACuuC-AGGga--GCGGGGUCG- -5'
19572 5' -56.6 NC_004686.1 + 26818 0.67 0.58811
Target:  5'- aGCCUUCgaugccGAGUUUCUCGCCgaucaCGGCg -3'
miRNA:   3'- gUGGAAGac----UUCAGGGAGCGGg----GUCG- -5'
19572 5' -56.6 NC_004686.1 + 37815 0.68 0.534491
Target:  5'- gGCUugUUCUGAgauAGgcgggCCgUCGCCCCAuGCg -3'
miRNA:   3'- gUGG--AAGACU---UCa----GGgAGCGGGGU-CG- -5'
19572 5' -56.6 NC_004686.1 + 32373 0.69 0.4827
Target:  5'- gCGCCUUCUcGGcucUCCgCUCGCCgCGGCc -3'
miRNA:   3'- -GUGGAAGA-CUuc-AGG-GAGCGGgGUCG- -5'
19572 5' -56.6 NC_004686.1 + 55631 0.69 0.462663
Target:  5'- cCACCgcaaggUgUGGAacgCCCUCGCCCaaCAGCa -3'
miRNA:   3'- -GUGGa-----AgACUUca-GGGAGCGGG--GUCG- -5'
19572 5' -56.6 NC_004686.1 + 36955 0.7 0.414585
Target:  5'- uCACCUUaUGAGcagCCCUCGCCgaacUCAGCg -3'
miRNA:   3'- -GUGGAAgACUUca-GGGAGCGG----GGUCG- -5'
19572 5' -56.6 NC_004686.1 + 11894 0.7 0.396231
Target:  5'- aCugCUgggaGAAGUcguuggcgcCCUUCGCCCCAGCc -3'
miRNA:   3'- -GugGAaga-CUUCA---------GGGAGCGGGGUCG- -5'
19572 5' -56.6 NC_004686.1 + 36262 0.71 0.378409
Target:  5'- cCACCgcCUGcauUCCCUCGUCCgAGCa -3'
miRNA:   3'- -GUGGaaGACuucAGGGAGCGGGgUCG- -5'
19572 5' -56.6 NC_004686.1 + 15923 0.75 0.192074
Target:  5'- gGCCggccgCUGAGGUCaCCUCGaCCUCAGUu -3'
miRNA:   3'- gUGGaa---GACUUCAG-GGAGC-GGGGUCG- -5'
19572 5' -56.6 NC_004686.1 + 10572 1.11 0.000499
Target:  5'- aCACCUUCUGAAGUCCCUCGCCCCAGCu -3'
miRNA:   3'- -GUGGAAGACUUCAGGGAGCGGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.