miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19573 5' -56.3 NC_004686.1 + 39147 0.66 0.679733
Target:  5'- gGCACGUAuGCGCAgaccugcucgaaugaGUGCCgaCGGGCg -3'
miRNA:   3'- gCGUGCGU-UGCGUa--------------UACGGg-GCCUGa -5'
19573 5' -56.3 NC_004686.1 + 28111 0.66 0.678646
Target:  5'- uCGCugGCggUGC---UGCUCUGGugUc -3'
miRNA:   3'- -GCGugCGuuGCGuauACGGGGCCugA- -5'
19573 5' -56.3 NC_004686.1 + 14591 0.66 0.656848
Target:  5'- gGUugGCGccGCGCcacgGCUCCGGAUc -3'
miRNA:   3'- gCGugCGU--UGCGuauaCGGGGCCUGa -5'
19573 5' -56.3 NC_004686.1 + 15673 0.66 0.656848
Target:  5'- uGCcCGCGAUGCG-GUGgCCCGG-CUg -3'
miRNA:   3'- gCGuGCGUUGCGUaUACgGGGCCuGA- -5'
19573 5' -56.3 NC_004686.1 + 11769 0.67 0.613059
Target:  5'- cCGUugGUucCGaCAUucaAUGCUCCGGGCUu -3'
miRNA:   3'- -GCGugCGuuGC-GUA---UACGGGGCCUGA- -5'
19573 5' -56.3 NC_004686.1 + 18284 0.67 0.613059
Target:  5'- aGCACgGCAGCGgGgcgaGCcuCCCGGACUu -3'
miRNA:   3'- gCGUG-CGUUGCgUaua-CG--GGGCCUGA- -5'
19573 5' -56.3 NC_004686.1 + 26632 0.67 0.602129
Target:  5'- cCGgGC-CGACGC---UGCCuCCGGACUa -3'
miRNA:   3'- -GCgUGcGUUGCGuauACGG-GGCCUGA- -5'
19573 5' -56.3 NC_004686.1 + 8573 0.67 0.602129
Target:  5'- --gGCGCAACGCGgcuuugAUGUCaCGGACa -3'
miRNA:   3'- gcgUGCGUUGCGUa-----UACGGgGCCUGa -5'
19573 5' -56.3 NC_004686.1 + 39942 0.68 0.526796
Target:  5'- aGCACGCGugGCGUgaccaagcguuGUGCuCCCaGGuCg -3'
miRNA:   3'- gCGUGCGUugCGUA-----------UACG-GGG-CCuGa -5'
19573 5' -56.3 NC_004686.1 + 12972 0.69 0.485322
Target:  5'- gGCGCGCcGCGCAaagcagaaGUCCCGGAa- -3'
miRNA:   3'- gCGUGCGuUGCGUaua-----CGGGGCCUga -5'
19573 5' -56.3 NC_004686.1 + 37493 0.69 0.485322
Target:  5'- aGCGCGCuucggcgauACGCAUcgucaaGUcGCCCuCGGACa -3'
miRNA:   3'- gCGUGCGu--------UGCGUA------UA-CGGG-GCCUGa -5'
19573 5' -56.3 NC_004686.1 + 21840 0.7 0.426239
Target:  5'- gGCGCG-GGCGCGggcggcgGCUCCGGACg -3'
miRNA:   3'- gCGUGCgUUGCGUaua----CGGGGCCUGa -5'
19573 5' -56.3 NC_004686.1 + 10596 0.7 0.426239
Target:  5'- cCGcCGCGCAGguCGCcgAUGCUuuGGGCg -3'
miRNA:   3'- -GC-GUGCGUU--GCGuaUACGGggCCUGa -5'
19573 5' -56.3 NC_004686.1 + 11601 0.71 0.354537
Target:  5'- uGCGCGCAugGCAggucuucCUCCGGGCc -3'
miRNA:   3'- gCGUGCGUugCGUauac---GGGGCCUGa -5'
19573 5' -56.3 NC_004686.1 + 42926 0.71 0.346194
Target:  5'- uGCACacCAcCGCAg--GCCCCGGGCUc -3'
miRNA:   3'- gCGUGc-GUuGCGUauaCGGGGCCUGA- -5'
19573 5' -56.3 NC_004686.1 + 45945 0.72 0.30661
Target:  5'- -aCACGCAAUGCcUAUGCCCaGGAUUc -3'
miRNA:   3'- gcGUGCGUUGCGuAUACGGGgCCUGA- -5'
19573 5' -56.3 NC_004686.1 + 10757 0.74 0.25065
Target:  5'- gGCAccccCGCGGCGCAagccGCCCUGGACg -3'
miRNA:   3'- gCGU----GCGUUGCGUaua-CGGGGCCUGa -5'
19573 5' -56.3 NC_004686.1 + 38417 0.74 0.225974
Target:  5'- cCGCGgGCAu--CAUcgGCCCCGGACUc -3'
miRNA:   3'- -GCGUgCGUugcGUAuaCGGGGCCUGA- -5'
19573 5' -56.3 NC_004686.1 + 49683 0.79 0.10531
Target:  5'- aGCACGCAGCGCAUGUGgCCgaGGAa- -3'
miRNA:   3'- gCGUGCGUUGCGUAUACgGGg-CCUga -5'
19573 5' -56.3 NC_004686.1 + 11223 1.08 0.000868
Target:  5'- cCGCACGCAACGCAUAUGCCCCGGACUg -3'
miRNA:   3'- -GCGUGCGUUGCGUAUACGGGGCCUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.