Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19575 | 3' | -62.2 | NC_004686.1 | + | 20428 | 0.77 | 0.062769 |
Target: 5'- aCGUCGUGGCCGgcgaCGGCGaaaauGcCCGCCCc -3' miRNA: 3'- -GCAGCACCGGCg---GCCGUau---C-GGCGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 18358 | 0.66 | 0.408136 |
Target: 5'- gCGUuugCGUGGCUGCUGGCGgggaucuccaccaaUaAGCCGgUCg -3' miRNA: 3'- -GCA---GCACCGGCGGCCGU--------------A-UCGGCgGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 49037 | 0.66 | 0.402001 |
Target: 5'- gGcCGUGGCUGUucauucccggCGGCAgcgAGgaCGCCCu -3' miRNA: 3'- gCaGCACCGGCG----------GCCGUa--UCg-GCGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 29116 | 0.66 | 0.402001 |
Target: 5'- gCGUCGggaucGG-CGUCGGCG-GGCCGCgCu -3' miRNA: 3'- -GCAGCa----CCgGCGGCCGUaUCGGCGgG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 16990 | 0.67 | 0.359928 |
Target: 5'- aCGggCcUGGCCGCCGGCG-GGUCGgCg -3' miRNA: 3'- -GCa-GcACCGGCGGCCGUaUCGGCgGg -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 31212 | 0.67 | 0.35189 |
Target: 5'- cCGUCGUcGCUGCgGGCGcgcaGGuuGCCg -3' miRNA: 3'- -GCAGCAcCGGCGgCCGUa---UCggCGGg -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 38956 | 0.67 | 0.321026 |
Target: 5'- aG-CGUGGCgaGCUGGCAccggugaAGCCGgCCa -3' miRNA: 3'- gCaGCACCGg-CGGCCGUa------UCGGCgGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 10743 | 0.68 | 0.303501 |
Target: 5'- uCGagGUuGuuGCCGGCAcccccgcggcgcaAGCCGCCCu -3' miRNA: 3'- -GCagCAcCggCGGCCGUa------------UCGGCGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 11414 | 0.68 | 0.27003 |
Target: 5'- aGUgGUGGCCGcCCGGUAUgcgggacauuuggaAGCa-CCCa -3' miRNA: 3'- gCAgCACCGGC-GGCCGUA--------------UCGgcGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 16866 | 0.69 | 0.263575 |
Target: 5'- uGUUGcguUGGCgGCCGGCAacacuauugagggcUGGuaugaCCGCCCa -3' miRNA: 3'- gCAGC---ACCGgCGGCCGU--------------AUC-----GGCGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 38059 | 0.7 | 0.229156 |
Target: 5'- uGUCGUGGuuCCGCCcGUuccuGCCGCCg -3' miRNA: 3'- gCAGCACC--GGCGGcCGuau-CGGCGGg -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 5912 | 0.7 | 0.212614 |
Target: 5'- gCGUC-UGGCCGgUGGCuaucGGCUGCCg -3' miRNA: 3'- -GCAGcACCGGCgGCCGua--UCGGCGGg -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 26267 | 0.72 | 0.159266 |
Target: 5'- uGUCGgggugugcUGGCaCGCCGGCcagggaucauauccGUGGCUGCCg -3' miRNA: 3'- gCAGC--------ACCG-GCGGCCG--------------UAUCGGCGGg -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 39829 | 0.75 | 0.102116 |
Target: 5'- gGUCGUGGCugggacCGCCGGCAgugcgcugaaUGGCgagugauCGCCCg -3' miRNA: 3'- gCAGCACCG------GCGGCCGU----------AUCG-------GCGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 55246 | 0.71 | 0.197108 |
Target: 5'- gCGUCGgcGGCUGCCGGUucgAGUCGguguuCCCg -3' miRNA: 3'- -GCAGCa-CCGGCGGCCGua-UCGGC-----GGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 6180 | 0.73 | 0.126755 |
Target: 5'- gGUCGUcagaagggucGGCgGCCaGGCAUGGCgCGaCCCg -3' miRNA: 3'- gCAGCA----------CCGgCGG-CCGUAUCG-GC-GGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 7191 | 0.74 | 0.117045 |
Target: 5'- gCGUCcuuGUGGCCGCCGuGCAcccuGCCgGCUCg -3' miRNA: 3'- -GCAG---CACCGGCGGC-CGUau--CGG-CGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 53287 | 0.76 | 0.08685 |
Target: 5'- gGUUuUGGCUGCCGGUGUGGCuugucauCGCCCu -3' miRNA: 3'- gCAGcACCGGCGGCCGUAUCG-------GCGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 51312 | 0.77 | 0.073974 |
Target: 5'- cCGuUCGUGGCUGCCGGggaucaugaGUGGUCGCUCa -3' miRNA: 3'- -GC-AGCACCGGCGGCCg--------UAUCGGCGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 24244 | 0.66 | 0.41433 |
Target: 5'- uGUUGggggugGGCCGCCuGGCGggguugguuucucaGGCCuucGCCCc -3' miRNA: 3'- gCAGCa-----CCGGCGG-CCGUa-------------UCGG---CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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