Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19575 | 3' | -62.2 | NC_004686.1 | + | 38059 | 0.7 | 0.229156 |
Target: 5'- uGUCGUGGuuCCGCCcGUuccuGCCGCCg -3' miRNA: 3'- gCAGCACC--GGCGGcCGuau-CGGCGGg -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 5912 | 0.7 | 0.212614 |
Target: 5'- gCGUC-UGGCCGgUGGCuaucGGCUGCCg -3' miRNA: 3'- -GCAGcACCGGCgGCCGua--UCGGCGGg -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 55246 | 0.71 | 0.197108 |
Target: 5'- gCGUCGgcGGCUGCCGGUucgAGUCGguguuCCCg -3' miRNA: 3'- -GCAGCa-CCGGCGGCCGua-UCGGC-----GGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 26267 | 0.72 | 0.159266 |
Target: 5'- uGUCGgggugugcUGGCaCGCCGGCcagggaucauauccGUGGCUGCCg -3' miRNA: 3'- gCAGC--------ACCG-GCGGCCG--------------UAUCGGCGGg -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 6180 | 0.73 | 0.126755 |
Target: 5'- gGUCGUcagaagggucGGCgGCCaGGCAUGGCgCGaCCCg -3' miRNA: 3'- gCAGCA----------CCGgCGG-CCGUAUCG-GC-GGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 7191 | 0.74 | 0.117045 |
Target: 5'- gCGUCcuuGUGGCCGCCGuGCAcccuGCCgGCUCg -3' miRNA: 3'- -GCAG---CACCGGCGGC-CGUau--CGG-CGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 39829 | 0.75 | 0.102116 |
Target: 5'- gGUCGUGGCugggacCGCCGGCAgugcgcugaaUGGCgagugauCGCCCg -3' miRNA: 3'- gCAGCACCG------GCGGCCGU----------AUCG-------GCGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 53287 | 0.76 | 0.08685 |
Target: 5'- gGUUuUGGCUGCCGGUGUGGCuugucauCGCCCu -3' miRNA: 3'- gCAGcACCGGCGGCCGUAUCG-------GCGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 51312 | 0.77 | 0.073974 |
Target: 5'- cCGuUCGUGGCUGCCGGggaucaugaGUGGUCGCUCa -3' miRNA: 3'- -GC-AGCACCGGCGGCCg--------UAUCGGCGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 20428 | 0.77 | 0.062769 |
Target: 5'- aCGUCGUGGCCGgcgaCGGCGaaaauGcCCGCCCc -3' miRNA: 3'- -GCAGCACCGGCg---GCCGUau---C-GGCGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 12421 | 1.1 | 0.000223 |
Target: 5'- uCGUCGUGGCCGCCGGCAUAGCCGCCCc -3' miRNA: 3'- -GCAGCACCGGCGGCCGUAUCGGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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