miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19578 5' -56 NC_004686.1 + 10065 0.68 0.532914
Target:  5'- uCCAGCG-CGCGGUgcaugacaacaucgcUGggUCGGC-GCa -3'
miRNA:   3'- uGGUCGCgGCGCCG---------------ACuuAGUUGaCG- -5'
19578 5' -56 NC_004686.1 + 39874 0.68 0.528655
Target:  5'- -gCGGCGCaaCGCGGU----UCGACUGCa -3'
miRNA:   3'- ugGUCGCG--GCGCCGacuuAGUUGACG- -5'
19578 5' -56 NC_004686.1 + 12108 0.68 0.518063
Target:  5'- -gCGGCuaCCGCGGCU---UCGGCUGCc -3'
miRNA:   3'- ugGUCGc-GGCGCCGAcuuAGUUGACG- -5'
19578 5' -56 NC_004686.1 + 5416 0.68 0.518063
Target:  5'- aGCCAGgucgGgCGUGGCUGAggugccggugGUCAGCUGa -3'
miRNA:   3'- -UGGUCg---CgGCGCCGACU----------UAGUUGACg -5'
19578 5' -56 NC_004686.1 + 17600 0.68 0.518063
Target:  5'- cGCCAGCaacgaCCGCGGCccGAUCAACa-- -3'
miRNA:   3'- -UGGUCGc----GGCGCCGacUUAGUUGacg -5'
19578 5' -56 NC_004686.1 + 26273 0.68 0.507557
Target:  5'- gGCCuGCgagGUCGgGGCggccguugcGGAUCGACUGCg -3'
miRNA:   3'- -UGGuCG---CGGCgCCGa--------CUUAGUUGACG- -5'
19578 5' -56 NC_004686.1 + 22452 0.69 0.497143
Target:  5'- uGCCGGUGCCGCcaUUGGagccGUCAccGCUGCc -3'
miRNA:   3'- -UGGUCGCGGCGccGACU----UAGU--UGACG- -5'
19578 5' -56 NC_004686.1 + 21248 0.69 0.476611
Target:  5'- uGCCAGCccCCGCGGCgcgGAA-CAAC-GCc -3'
miRNA:   3'- -UGGUCGc-GGCGCCGa--CUUaGUUGaCG- -5'
19578 5' -56 NC_004686.1 + 17521 0.69 0.456508
Target:  5'- gAUCGG-GCCGCGGUcguugcUGGcgCAGCUGUu -3'
miRNA:   3'- -UGGUCgCGGCGCCG------ACUuaGUUGACG- -5'
19578 5' -56 NC_004686.1 + 6238 0.7 0.43687
Target:  5'- cGCCAGCGCgGCGGgU---UCAAcCUGUg -3'
miRNA:   3'- -UGGUCGCGgCGCCgAcuuAGUU-GACG- -5'
19578 5' -56 NC_004686.1 + 55036 0.7 0.427234
Target:  5'- -gCGGCGCUGCGGUUGAAcugggcgucUCcGgUGCg -3'
miRNA:   3'- ugGUCGCGGCGCCGACUU---------AGuUgACG- -5'
19578 5' -56 NC_004686.1 + 12363 0.7 0.427234
Target:  5'- aGCCAGCGCgGa-GCaccaaacgGAGUCAACUGUu -3'
miRNA:   3'- -UGGUCGCGgCgcCGa-------CUUAGUUGACG- -5'
19578 5' -56 NC_004686.1 + 36154 0.7 0.417726
Target:  5'- uGCCuacGgGCCGUGGgaGu-UCGACUGCu -3'
miRNA:   3'- -UGGu--CgCGGCGCCgaCuuAGUUGACG- -5'
19578 5' -56 NC_004686.1 + 32796 0.7 0.417726
Target:  5'- uCCAGCGCuCGaaCGGCaucUGggUCGGCaGCa -3'
miRNA:   3'- uGGUCGCG-GC--GCCG---ACuuAGUUGaCG- -5'
19578 5' -56 NC_004686.1 + 4122 0.7 0.408348
Target:  5'- uACaCAGCGCCGCGGgaGg--CGACcaugaUGCa -3'
miRNA:   3'- -UG-GUCGCGGCGCCgaCuuaGUUG-----ACG- -5'
19578 5' -56 NC_004686.1 + 52279 0.71 0.389992
Target:  5'- aGCCAGCGuuGCagaucGGCccccUCGGCUGCg -3'
miRNA:   3'- -UGGUCGCggCG-----CCGacuuAGUUGACG- -5'
19578 5' -56 NC_004686.1 + 17900 0.71 0.372184
Target:  5'- cACCAcauCGCCGCGauGCgGAAUCAcCUGCa -3'
miRNA:   3'- -UGGUc--GCGGCGC--CGaCUUAGUuGACG- -5'
19578 5' -56 NC_004686.1 + 49757 0.71 0.372184
Target:  5'- gGCCAcaugcgcugcGUGCuCGCGGCUGAGUCGgucuuccucGCcGCa -3'
miRNA:   3'- -UGGU----------CGCG-GCGCCGACUUAGU---------UGaCG- -5'
19578 5' -56 NC_004686.1 + 25824 0.71 0.363491
Target:  5'- cGCCGGC-CCGCGGCcggGAcagAUCAACgGUu -3'
miRNA:   3'- -UGGUCGcGGCGCCGa--CU---UAGUUGaCG- -5'
19578 5' -56 NC_004686.1 + 52821 0.71 0.354938
Target:  5'- uCCGGaGUCGUGGC-GAAUCAAuCUGCa -3'
miRNA:   3'- uGGUCgCGGCGCCGaCUUAGUU-GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.