miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19579 3' -53.8 NC_004686.1 + 209 0.66 0.807818
Target:  5'- aCGcCUgacaaucCGCGGUGaUCCGCaaCGCACACg -3'
miRNA:   3'- -GCaGAa------GCGCCAUgAGGUG--GUGUGUG- -5'
19579 3' -53.8 NC_004686.1 + 43727 0.66 0.78838
Target:  5'- aCGUUggUCGCGGcACgcaaccugggCCGCCGCGC-Ca -3'
miRNA:   3'- -GCAGa-AGCGCCaUGa---------GGUGGUGUGuG- -5'
19579 3' -53.8 NC_004686.1 + 49368 0.67 0.769304
Target:  5'- cCGUCggguucggaccaaGCGcGUACUUCAgCCGCGCGCu -3'
miRNA:   3'- -GCAGaag----------CGC-CAUGAGGU-GGUGUGUG- -5'
19579 3' -53.8 NC_004686.1 + 5638 0.67 0.768284
Target:  5'- gGUCgaCGCGGUcacaGCcuccgggCCGCCACGgACg -3'
miRNA:   3'- gCAGaaGCGCCA----UGa------GGUGGUGUgUG- -5'
19579 3' -53.8 NC_004686.1 + 35044 0.67 0.743429
Target:  5'- gCGaUCgcgUCGCGGUAUgccuugaucccgaCCGCCuCACACa -3'
miRNA:   3'- -GC-AGa--AGCGCCAUGa------------GGUGGuGUGUG- -5'
19579 3' -53.8 NC_004686.1 + 53196 0.67 0.737106
Target:  5'- gGUCUagcCGCGGaUGCaCCACCAgAUGCg -3'
miRNA:   3'- gCAGAa--GCGCC-AUGaGGUGGUgUGUG- -5'
19579 3' -53.8 NC_004686.1 + 46072 0.68 0.661155
Target:  5'- aGUCUgCGCauccGU-UUCCGCCGCACACc -3'
miRNA:   3'- gCAGAaGCGc---CAuGAGGUGGUGUGUG- -5'
19579 3' -53.8 NC_004686.1 + 11614 0.69 0.639042
Target:  5'- gGUCUUCcuccgggcCGGUACUUCACCAC-CGa -3'
miRNA:   3'- gCAGAAGc-------GCCAUGAGGUGGUGuGUg -5'
19579 3' -53.8 NC_004686.1 + 7096 0.69 0.627971
Target:  5'- --cCUUCGCGGcgGCUuccucgaacgCCACCACAcCACc -3'
miRNA:   3'- gcaGAAGCGCCa-UGA----------GGUGGUGU-GUG- -5'
19579 3' -53.8 NC_004686.1 + 26638 0.69 0.605849
Target:  5'- uGUCcUUGCGG-ACUUCGCCGCGgaacCACg -3'
miRNA:   3'- gCAGaAGCGCCaUGAGGUGGUGU----GUG- -5'
19579 3' -53.8 NC_004686.1 + 31432 0.7 0.583818
Target:  5'- aCGUCUgcUgGCuGGUACUCC-CCGUACACc -3'
miRNA:   3'- -GCAGA--AgCG-CCAUGAGGuGGUGUGUG- -5'
19579 3' -53.8 NC_004686.1 + 48755 0.71 0.518959
Target:  5'- cCGUCUUCGCGGUgaaGCUUaauCCGCAg-- -3'
miRNA:   3'- -GCAGAAGCGCCA---UGAGgu-GGUGUgug -5'
19579 3' -53.8 NC_004686.1 + 7146 0.71 0.508408
Target:  5'- gCGUCgcUGCGGUG--UCACCAUACGCa -3'
miRNA:   3'- -GCAGaaGCGCCAUgaGGUGGUGUGUG- -5'
19579 3' -53.8 NC_004686.1 + 14158 1.1 0.001316
Target:  5'- cCGUCUUCGCGGUACUCCACCACACACu -3'
miRNA:   3'- -GCAGAAGCGCCAUGAGGUGGUGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.